Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0843
(512 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22177-7|CAA80149.1| 171|Caenorhabditis elegans Hypothetical pr... 31 0.37
Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical pr... 31 0.64
Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 30 1.1
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 30 1.1
AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical ... 29 1.5
Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z66498-3|CAA91293.2| 687|Caenorhabditis elegans Hypothetical pr... 29 2.0
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 29 2.0
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 29 2.0
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 29 2.0
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 29 2.6
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 29 2.6
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1... 28 3.4
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1... 28 3.4
AF098500-1|AAC67400.2| 311|Caenorhabditis elegans Hypothetical ... 28 3.4
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein. 28 3.4
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 28 4.5
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 4.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 4.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 4.5
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 28 4.5
AC006610-7|AAK85451.1| 392|Caenorhabditis elegans Hypothetical ... 28 4.5
Z75531-11|CAN86615.1| 129|Caenorhabditis elegans Hypothetical p... 27 6.0
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 27 6.0
Z99281-3|CAB16508.1| 482|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z69662-3|CAA93502.1| 449|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z66498-1|CAA91290.1| 304|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical pr... 27 7.9
AC024807-2|AAF59528.2| 431|Caenorhabditis elegans Hypothetical ... 27 7.9
>Z22177-7|CAA80149.1| 171|Caenorhabditis elegans Hypothetical
protein ZK512.8 protein.
Length = 171
Score = 31.5 bits (68), Expect = 0.37
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = +2
Query: 206 SPALLHPT--SDPLRGQNQDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSV 379
SP H + S+P + DE+ L R + D HP + + +P + E S TSA S
Sbjct: 43 SPVSTHLSLASNPTEFKFMDEIALLKRGRIDKDAPKHPYNRRGQQPMMKKEISVTSAHSN 102
Query: 380 RQ-PVGPPRRCRWCPGIP 430
PV P G+P
Sbjct: 103 SSLPVRSPAIMTLMGGVP 120
>Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical
protein F08G5.4 protein.
Length = 299
Score = 30.7 bits (66), Expect = 0.64
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2
Query: 442 SGPAGYSGTPAAPSGRPDGLPYRDG 368
+GPAG G P AP PDG P +DG
Sbjct: 144 AGPAGPDGAPGAPG--PDGQPGQDG 166
>Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical
protein C50B6.4 protein.
Length = 291
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = -2
Query: 442 SGPAGYSGTPAAP--SGRPDGLPYRDGRR 362
+GPAG +G P AP G+P G P +DG+R
Sbjct: 171 AGPAGDAGAPGAPGQDGQP-GAPGQDGQR 198
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -2
Query: 463 VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 368
VP +Q SG GY G P P + DG P RDG
Sbjct: 1129 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1164
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -2
Query: 463 VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 368
VP +Q SG GY G P P + DG P RDG
Sbjct: 1386 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1421
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -2
Query: 463 VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 368
VP +Q SG GY G P P + DG P RDG
Sbjct: 1385 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1420
>AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical
protein Y2H9A.3 protein.
Length = 291
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -2
Query: 442 SGPAGYSGTPAAP--SGRPDGLPYRDGRR 362
+GPAG +G P AP G+P G P +DG R
Sbjct: 171 AGPAGDAGAPGAPGQDGQP-GAPGQDGHR 198
>Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical
protein F57B7.3 protein.
Length = 295
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 442 SGPAGYSGTPAAPSGR-PDGLPYRDGRRFR 356
+GP G +GTP P + DG P ++GRR R
Sbjct: 173 AGPQGDAGTPGQPGQQGQDGRPGQNGRRGR 202
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -2
Query: 478 STVYRVPTRQAGSGPAGYSGTPAAPSGRPDGLPYRDG 368
ST +P GP G G P AP P G P +DG
Sbjct: 128 STSECIPCPAGAPGPQGPDGAPGAPG--PSGQPGQDG 162
>Z66498-3|CAA91293.2| 687|Caenorhabditis elegans Hypothetical
protein M195.3 protein.
Length = 687
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 376 GTAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTA 504
GT A + + ++ TPL + + R+ PSTGR STA
Sbjct: 529 GTGAPKRSNGPAFNNQITPLAVSSTVSTARNGPSTGRRTESTA 571
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 439 GPAGYSGTPAAPSG-RPDGLPYRDG 368
GP+G SG PA P PDG P R G
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPG 150
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 439 GPAGYSGTPAAPSG-RPDGLPYRDG 368
GP+G SG PA P PDG P R G
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPG 150
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -2
Query: 439 GPAGYSGTPAAPSGRP-DGLPYRDGRRFRAFD 347
GP GY G P P R DG P +G A+D
Sbjct: 144 GPTGYPGAPGEPGSRGLDGRPGANGVTLIAYD 175
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = -2
Query: 439 GPAGYSGTPAAPSGRP--DGLPYRDGRR 362
GPAG +G P AP G P DG P ++G+R
Sbjct: 173 GPAGDAGAPGAP-GAPGNDGQPGQNGQR 199
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -2
Query: 439 GPAGYSGTPAAPSGRP--DGLPYRDGRRFRAFDSP 341
GPAG +G+P P G P G P R G+R R P
Sbjct: 173 GPAGDAGSPGQP-GHPGSPGNPGRGGQRSRGLPGP 206
>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
isoform a protein.
Length = 1409
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 204 SFSGWVLKSLGPRSAHNTMQTVESHIPRAPLLRG 103
S++GW S+ P+SA++ M +E + R L G
Sbjct: 1302 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1335
>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
isoform b protein.
Length = 1444
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 204 SFSGWVLKSLGPRSAHNTMQTVESHIPRAPLLRG 103
S++GW S+ P+SA++ M +E + R L G
Sbjct: 1337 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1370
>AF098500-1|AAC67400.2| 311|Caenorhabditis elegans Hypothetical
protein F43B10.1 protein.
Length = 311
Score = 28.3 bits (60), Expect = 3.4
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Frame = +2
Query: 164 DRGPKDFRTHPLNDSPALLH-PTSDPLRGQNQDEVGGLPRSTLQPDGAAHPKDAQPTEPS 340
D+ P ++T P + L H SDPLR + PR L D P+ T
Sbjct: 145 DKMPS-YKTRPFMEKLDLSHLGPSDPLRDSDLQPAITTPRKNLNFDLPRSPRIETTTSAD 203
Query: 341 RRIEGSETSAVSVRQP 388
R +E S+ P
Sbjct: 204 RNVELRRLRRKSIESP 219
>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
Length = 1409
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 204 SFSGWVLKSLGPRSAHNTMQTVESHIPRAPLLRG 103
S++GW S+ P+SA++ M +E + R L G
Sbjct: 1302 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1335
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 460 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGR 365
P + G+G G +G P AP G G P +DG+
Sbjct: 219 PGQSGGAGAPGPAGAPGAPGG--PGQPGQDGQ 248
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 27.9 bits (59), Expect = 4.5
Identities = 25/96 (26%), Positives = 37/96 (38%)
Frame = +1
Query: 199 KRLPCTLTPDVRSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADGAFEANRRL*NVGRLG 378
+R P T +P SPP P G + ++ R P+G P G R+
Sbjct: 341 ERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRK-------S 393
Query: 379 TAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGR 486
+ ++ P R +P + P GS P TGR
Sbjct: 394 SEESSESREEPRGPRRSPPTGSPPTGS----PPTGR 425
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 27.9 bits (59), Expect = 4.5
Identities = 25/96 (26%), Positives = 37/96 (38%)
Frame = +1
Query: 199 KRLPCTLTPDVRSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADGAFEANRRL*NVGRLG 378
+R P T +P SPP P G + ++ R P+G P G R+
Sbjct: 362 ERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRK-------S 414
Query: 379 TAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGR 486
+ ++ P R +P + P GS P TGR
Sbjct: 415 SEESSESREEPRGPRRSPPTGSPPTGS----PPTGR 446
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 27.9 bits (59), Expect = 4.5
Identities = 25/96 (26%), Positives = 37/96 (38%)
Frame = +1
Query: 199 KRLPCTLTPDVRSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADGAFEANRRL*NVGRLG 378
+R P T +P SPP P G + ++ R P+G P G R+
Sbjct: 347 ERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRK-------S 399
Query: 379 TAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGR 486
+ ++ P R +P + P GS P TGR
Sbjct: 400 SEESSESREEPRGPRRSPPTGSPPTGS----PPTGR 431
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -2
Query: 460 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGR 365
P GPAG +G P AP G P G P DG+
Sbjct: 185 PGAAGDKGPAGPNGNPGAP-GSP-GKPGEDGK 214
>AC006610-7|AAK85451.1| 392|Caenorhabditis elegans Hypothetical
protein C30F12.5 protein.
Length = 392
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +2
Query: 167 RGPKDFRTHPLN----DSPALLHPTSDPLRGQNQDEVGGLPRSTLQPDGAAHP 313
+G KD+ + D P + HP PL + G +PR+ L P+GA P
Sbjct: 303 KGQKDYENGSMGQLPIDEPRIGHPLYSPLPPIDPT-YGTIPRARLAPNGAPPP 354
>Z75531-11|CAN86615.1| 129|Caenorhabditis elegans Hypothetical
protein C54D10.13 protein.
Length = 129
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 291 CSVDRGSPPTSSWF*PRRGSDVGCKSAGESFSGWVLKS 178
CS DR + S+F +RG V KS E+FS ++K+
Sbjct: 82 CSQDRCNNERDSFF-HQRGGGVSWKSGAETFSTSIIKT 118
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/29 (55%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Frame = -2
Query: 439 GPAGYSGTPAAPS--GRP--DGLPYRDGR 365
GPAG SG P P GRP GLP GR
Sbjct: 113 GPAGPSGAPGKPGRPGRPGAGGLPGNPGR 141
>Z99281-3|CAB16508.1| 482|Caenorhabditis elegans Hypothetical
protein Y57G11C.6 protein.
Length = 482
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 271 ATAVNTTTRRRGSPQGRPADGAFEANRRL*NVGRLGTAARRAAQTVPLVSRNT 429
AT+V T G P PA+ A + + + N G+ A +A P+ ++T
Sbjct: 107 ATSVAGTVTTTGMPALLPAENATQPLKEVVNSGKKSKGAPNSATATPVSHKST 159
>Z69662-3|CAA93502.1| 449|Caenorhabditis elegans Hypothetical
protein F56D5.3 protein.
Length = 449
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 263 VGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAV 373
V + R+T Q G P A+P P + + G SAV
Sbjct: 334 VDAITRNTTQGIGLGRPATAEPDLPKKLLNGDVPSAV 370
>Z66498-1|CAA91290.1| 304|Caenorhabditis elegans Hypothetical
protein M195.1 protein.
Length = 304
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -2
Query: 445 GSGPAGYSGTPAAPSGRP--DGLPYRDGR 365
GSGPAG GTP GR DG P DG+
Sbjct: 113 GSGPAGPPGTP-GEDGRDGNDGQPGPDGQ 140
>Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical
protein R08D7.1 protein.
Length = 458
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +2
Query: 203 DSPALLHPTSDP-LRGQNQDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSV 379
+SP+ + S P R D PR+ + D P +P+ P+RR + + S
Sbjct: 170 ESPSARNRRSPPRTRRDRHDSDNSPPRNRSRRDSDNSPPRRRPSSPARRRKDDDLSPPRK 229
Query: 380 RQPVGPPRRCR 412
+ + P++ +
Sbjct: 230 SRKIEEPKKIK 240
>AC024807-2|AAF59528.2| 431|Caenorhabditis elegans Hypothetical
protein Y53G8AL.2 protein.
Length = 431
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 205 LPCTLTPDVRSPPRSEPG*GRGATAVNTTTRR 300
LP P +RSPP ++ GRGAT + + T +
Sbjct: 396 LPAPSLP-LRSPPLTKKNTGRGATGIKSETSK 426
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,554,773
Number of Sequences: 27780
Number of extensions: 266461
Number of successful extensions: 1398
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -