Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0843
         (512 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29440.1 68417.m04203 expressed protein  contains Pfam profil...    32   0.26 
At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P1...    30   1.1  
At2g45910.1 68415.m05709 protein kinase family protein / U-box d...    28   3.2  
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-...    28   4.2  
At4g31480.1 68417.m04472 coatomer beta subunit, putative / beta-...    28   4.2  
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1...    28   4.2  
At1g23540.1 68414.m02960 protein kinase family protein contains ...    27   5.6  
At1g11480.1 68414.m01319 eukaryotic translation initiation facto...    27   5.6  
At4g29800.1 68417.m04243 patatin-related low similarity to patat...    27   7.4  
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro...    27   7.4  
At2g44440.1 68415.m05526 emsy N terminus domain-containing prote...    27   7.4  
At2g27390.1 68415.m03306 proline-rich family protein contains pr...    27   7.4  
At4g35520.1 68417.m05049 DNA mismatch repair family protein simi...    27   9.8  
At1g76010.1 68414.m08825 expressed protein                             27   9.8  

>At4g29440.1 68417.m04203 expressed protein  contains Pfam profile:
            PF03398 eukaryotic protein of unknown function, DUF292
          Length = 1090

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +2

Query: 173  PKDFRTHPLNDSPALLHPTSDPLRGQ--NQDEVGGLPRST-LQPDGAAHPKDAQPTEPSR 343
            PK  +  P  DSP  L P   P   Q  +   +  LP++    PD  + PK     +P+ 
Sbjct: 944  PKTNKASPDQDSPPKLVPKEKPAAKQRGSASSLSFLPKTDKASPDQDSPPKLLPKEKPAA 1003

Query: 344  RIEGSETSAVSV 379
            + +GS TS+ S+
Sbjct: 1004 KQQGSATSSSSL 1015


>At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to
           SP|P14714 Phytochrome C {Arabidopsis thaliana}
          Length = 1111

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 192 WVLKSLGPRSAHNTMQTVESHIPRAPLLRGDLVGGSALY 76
           WVLKS G  +   T   +ES  P A +L   + G +A+Y
Sbjct: 465 WVLKSHGGNTGFTTESLMESGYPDASVLGESICGMAAVY 503


>At2g45910.1 68415.m05709 protein kinase family protein / U-box
           domain-containing protein contains Pfam profiles PF00069
           Eukaryotic protein kinase domain,  PF04564: U-box
           domain; supported by tandem duplication of  (GI:3386604)
           (TIGR_Ath1:At2g45920) [Arabidopsis thaliana]
          Length = 834

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 100 VPAQKGRAGYVRLNGLHGVVSRPRAQGF*DPPTKRL 207
           +PA   RAG +R +G+    SR    G  D P  RL
Sbjct: 7   IPAMGERAGSMRFHGIGSPGSRSSRSGIMDEPVSRL 42


>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
           beta-coat protein, putative / beta-COP, putative similar
           to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
           from {Rattus norvegicus} SP|P23514, {Mus musculus}
           SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 948

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 10/26 (38%), Positives = 21/26 (80%)
 Frame = +2

Query: 314 KDAQPTEPSRRIEGSETSAVSVRQPV 391
           ++++PTE S++I+ + ++ VS R+PV
Sbjct: 488 EESEPTETSKKIQPTSSAMVSSRKPV 513


>At4g31480.1 68417.m04472 coatomer beta subunit, putative /
           beta-coat protein, putative / beta-COP, putative similar
           to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
           from {Rattus norvegicus} SP|P23514, {Mus musculus}
           SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 971

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 10/26 (38%), Positives = 21/26 (80%)
 Frame = +2

Query: 314 KDAQPTEPSRRIEGSETSAVSVRQPV 391
           ++++PTE S++I+ + ++ VS R+PV
Sbjct: 511 EESEPTETSKKIQPTSSAMVSSRKPV 536


>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
           (KTN1) [Arabidopsis thaliana] GI:14133602
          Length = 523

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 78  RGPNLLRGPRAKGARGVCETQRSAWCCEQTAGPR 179
           RGP    GP ++G RG   ++ +A     TAG +
Sbjct: 155 RGPTTRTGPASRGGRGGATSKSTAGARSSTAGKK 188


>At1g23540.1 68414.m02960 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 17/56 (30%), Positives = 21/56 (37%)
 Frame = +2

Query: 170 GPKDFRTHPLNDSPALLHPTSDPLRGQNQDEVGGLPRSTLQPDGAAHPKDAQPTEP 337
           GP +  + PL   PA   P SDP        +       +QP G A    A P  P
Sbjct: 143 GPTNPESPPLQSPPA--PPASDPTNSPPASPLDPTNPPPIQPSGPATSPPANPNAP 196


>At1g11480.1 68414.m01319 eukaryotic translation initiation
           factor-related contains weak similarity to
           Swiss-Prot:P23588 eukaryotic translation initiation
           factor 4B (eIF-4B) [Homo sapiens]
          Length = 578

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 462 SRPGRLVLVQRGIPGHQRHRLGGPT 388
           +RP  LVL +RGI   + H+L  PT
Sbjct: 400 ARPRELVLKERGIDEPEHHKLDQPT 424


>At4g29800.1 68417.m04243 patatin-related low similarity to patatin
           precursor [Solanum brevidens][GI:563125]; contains
           Patatin domain PF01743
          Length = 525

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +2

Query: 203 DSPALLHPTSDPLRGQNQDEVGGLPRSTLQPDGAAHP 313
           + P LL     PLR     E G  PRS L P+G   P
Sbjct: 72  EDPRLLWIPQSPLR-PGDSEAGPSPRSPLTPNGVVLP 107


>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
           protein similar to PIR|JC7196 phytocyanin-related
           protein Pn14 {Ipomoea nil}; contains Pfam profile
           PF02298: Plastocyanin-like domain
          Length = 349

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = +2

Query: 275 PRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQP 388
           P S   P GA  PK + P  P+    GS T       P
Sbjct: 150 PGSMTPPGGAHSPKSSSPVSPTTSPPGSTTPPGGAHSP 187


>At2g44440.1 68415.m05526 emsy N terminus domain-containing protein
           / ENT domain-containing protein contains Pfam profile
           PF03735: ENT domain
          Length = 429

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 221 HPTSDPLRGQNQDEVGGLPRSTLQPDGAAHPK 316
           HP+  P RGQ  + +  +P S+ +P     P+
Sbjct: 219 HPSDQPPRGQVMNRLPSVPASSSEPTNGIDPE 250


>At2g27390.1 68415.m03306 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 134

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 181 F*DPPTKRLPCTLTPDVRSPPRSEP 255
           F  PP  RLP  L P    PPR  P
Sbjct: 80  FPPPPLPRLPPPLLPPPEEPPREPP 104


>At4g35520.1 68417.m05049 DNA mismatch repair family protein similar
           to SP|Q9UHC1 DNA mismatch repair protein Mlh3 (MutL
           protein homolog 3) {Homo sapiens}; contains Pfam
           profiles PF02518: ATPase, histidine kinase-, DNA gyrase
           B-, and HSP90-like domain protein, PF01119: DNA mismatch
           repair protein, C-terminal domain
          Length = 1151

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 261 SSWF*PRRGSDVGCKSAGESFS 196
           + WF P+  SD GC   GE F+
Sbjct: 577 TDWFTPQCSSDRGCVGIGEDFN 598


>At1g76010.1 68414.m08825 expressed protein
          Length = 350

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 25/85 (29%), Positives = 33/85 (38%)
 Frame = +1

Query: 79  EGRTSYEVPAQKGRAGYVRLNGLHGVVSRPRAQGF*DPPTKRLPCTLTPDVRSPPRSEPG 258
           +GR  Y+ P  +GR GY    G  G    P+ +G  D P++       P         P 
Sbjct: 245 QGRGGYDGP--QGRGGYDGPQGRRGYDGPPQGRGGYDGPSQGRGGYDGPSQGRGGYDGPS 302

Query: 259 *GRGATAVNTTTRRRGSPQGRPADG 333
            GRG        R RG  +GR   G
Sbjct: 303 QGRGGYD-GPQGRGRGRGRGRGGRG 326


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,076,395
Number of Sequences: 28952
Number of extensions: 244050
Number of successful extensions: 749
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)