Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0842
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 30 0.32
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa... 29 0.57
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 28 0.99
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 0.99
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 27 2.3
SPBC887.01 |||acireductone dioxygenase family|Schizosaccharomyce... 27 3.0
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 27 3.0
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 3.0
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 4.0
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M... 26 4.0
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 26 5.3
SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 ... 26 5.3
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 25 7.0
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo... 25 7.0
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 25 9.2
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 25 9.2
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces... 25 9.2
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 25 9.2
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 9.2
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 9.2
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces... 25 9.2
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 29.9 bits (64), Expect = 0.32
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 4/110 (3%)
Frame = +1
Query: 106 KVNN*MAAMLQSASKVTINTGNVLNLIDIKKKAGQNVTEELSESI----KLTLSEWSTEN 273
K N A + K + +T KKKA +V++++ ES+ T S+ +
Sbjct: 85 KENETELANISGPHKKSTSTSTRKRARSSKKKATDSVSDKIDESVASYDSSTHLRRSSRS 144
Query: 274 GKPLQNGSALSHEVPERSSHSTNLVDSTAETDVYITRPHDDIKTKMSEEE 423
KP+ S+ E E+ S +T V E + +K + S +E
Sbjct: 145 KKPVNYNSSSESESEEQISKATKKVKQKEEEEYVEEVDEKSLKNESSSDE 194
>SPCC1753.03c |rec7||meiotic recombination protein Rec7
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 339
Score = 29.1 bits (62), Expect = 0.57
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +1
Query: 397 IKTKMSEEERKNLKIGVKIFINEDSTVALKESLENVFTAL 516
+ T+++EEE K L+ V ++ +DS + L +SLE V+ +
Sbjct: 301 LPTELTEEE-KQLRSKVLFYLKQDSFIQLCQSLERVWNKM 339
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 28.3 bits (60), Expect = 0.99
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +1
Query: 361 ETDVYITRPHDDIKTKMSEEERKNLKIGVKIFINEDSTVALKESLENVFTALQTEYIDNV 540
+ D I++ D ++ E+RK +G+K F E + L+ + +L +Y D
Sbjct: 19 QADETISKLCDRLEHATLFEDRKAAALGIKSFAREFKELVAAHGLKGIIQSLHRDYDDPE 78
Query: 541 IL 546
+L
Sbjct: 79 LL 80
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.3 bits (60), Expect = 0.99
Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 8/151 (5%)
Frame = +1
Query: 175 LNLIDIKKKAGQNVTEELSESIKLTLSEWSTENGKPLQNGSALSHEVPERSSHSTNLVDS 354
LN ++ + +EL ES K +L E +QN S+ + S ++VD+
Sbjct: 725 LNDLEKSLVLSERSKDELDESYK-SLQEQLASKKIEVQNVSSQLSICNSQLEQSNHIVDN 783
Query: 355 TAETDVYITRPHDDIKTKMSEEERK-------NLKIGVKIFINEDSTVALKESLENVFTA 513
++ +T D +K +S E K N + +I + A +S+ +
Sbjct: 784 LKSENLLLTSVKDKLKADLSNLESKLSSLQQDNFHMKAQIESSNQEYTATVDSMNSRILE 843
Query: 514 LQTEY-IDNVILSYNPDFLNTVEAGNEADLR 603
L + + N LS D + + N DLR
Sbjct: 844 LSNDLRVANSKLSECSDDVRRLTLQNSFDLR 874
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.1 bits (57), Expect = 2.3
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Frame = +1
Query: 139 SASKVTINTGNVLNLIDIKKKAGQNVTEELSESIKLTLSEWSTENGKPLQNGSALSHEVP 318
+A K T +TG + + D +K S++ SE S+ N KP + G S
Sbjct: 58 NAQKKTESTGKITSEADTEKYNSSKSPVNKEGSVEKKSSEKSSTNNKPWR-GDNTSKPSA 116
Query: 319 ERSSHSTNLVDSTAETDVYITR----PHDDIKTKMSEEE 423
S+ T+ ET I + P +++ K + +E
Sbjct: 117 NSSAERTSSQHQKPETSSQIGKDNAAPVENVNEKSTSQE 155
>SPBC887.01 |||acireductone dioxygenase family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 178
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +1
Query: 445 VKIFINEDSTVALKESLENVFTALQTEYIDNVILSY-NPDFL---NTVEAGNEADLRNSY 612
V+IF+ + + L + + FT +YI + L + NP ++ T E D R SY
Sbjct: 109 VRIFVEKGDLIILPPGIYHRFTTTTDDYIHAMRLFHENPKWIALSRTDSTSEELDARKSY 168
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 26.6 bits (56), Expect = 3.0
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +1
Query: 283 LQNGSALSHEVPERS--SHSTNLVDSTAETDVYITRPHDDIKTKMSEEERKNLKIGVKIF 456
L+NG A+S + S ST L DS + + +++ +D+ + ++KNL F
Sbjct: 424 LRNGDAVSTVANNKRLRSLSTYLTDSRRKANRFLS--YDEEHYFL---QKKNL------F 472
Query: 457 INEDSTVALKESLENVFTALQT 522
+N D T+ KE LE + + T
Sbjct: 473 LNADGTLVAKEKLEKIAVQIDT 494
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 3.0
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +1
Query: 391 DDIKT-KMSEEERKNLKIGVKIFINEDSTVALKESLENVFTALQTEYIDNVILSYNPDFL 567
DD KT +S ER L+ VKIF DS +L + + + ID+ ILS L
Sbjct: 2266 DDNKTLTLSNGERIALQPYVKIFFEADSVASLTRATISRCGLICISNIDDNILSSTDKML 2325
Query: 568 NTVEAGNEADLRNS 609
+ L +S
Sbjct: 2326 SFTSGATNYPLGSS 2339
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 181 LIDIKKKAGQNVTEELSESIKLTLSEWSTENGK 279
L + K+GQN+ E +E+I+ L E S E+ +
Sbjct: 2388 LFAVVSKSGQNMNEASAEAIEQLLDEISAESSE 2420
>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 442 GVKIFINEDSTVALKESLENVFTALQTEYI-DNVILSYN 555
G +FI ++ L ESLEN F L Y N +SY+
Sbjct: 29 GAPLFIRKNDAAFLNESLENSFEFLMQLYAPKNSEISYH 67
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/67 (23%), Positives = 28/67 (41%)
Frame = +1
Query: 268 ENGKPLQNGSALSHEVPERSSHSTNLVDSTAETDVYITRPHDDIKTKMSEEERKNLKIGV 447
E+ KP N S V ++ HS N + +V T+PH ++ + K+ G
Sbjct: 1069 ESTKPAVNNSTKPVAVTSKNGHSRNGSHAAHSNNVIGTQPHVNVSAVPNTGNLKDALEGS 1128
Query: 448 KIFINED 468
+ +D
Sbjct: 1129 AVSKTDD 1135
>SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 218
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -3
Query: 453 DLDANLQILSLLLAHFRFDIIMRP 382
D DA+LQ +LL +HFRF +M+P
Sbjct: 178 DEDADLQ--NLLKSHFRFVQVMKP 199
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +1
Query: 154 TINTGNVLNLID-IKKKAGQNVTEELSESIKLTLSEWSTENGKPLQN 291
T+ G V I+ I G+ S T++EW+ GKPL N
Sbjct: 59 TVLYGGVDRSIEGIVWSTGEEELRLFSIGFSTTITEWNLHTGKPLVN 105
>SPAC27F1.08 |pdt1||Nramp family manganese ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 521
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 587 LPASTVFKKSGLYERI 540
LP+STVF + GLY I
Sbjct: 246 LPSSTVFSREGLYSSI 261
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 25.0 bits (52), Expect = 9.2
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 277 KPLQNG-SALSHEVPERSSHSTNLVDSTAETDVYITRPHDDIKTKMSE 417
+P++NG + E + S NL+ A+ D+Y R KT++S+
Sbjct: 146 RPVRNGVRPMDLEAMKHISKRVNLIPVIAKADMYTRRDLALYKTRISQ 193
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 9.2
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = -2
Query: 391 HEALLY-----IHRSQPWNRLGSLSEKTFLELRGTTPIHSVTASRFPYSIRIELI 242
H+ +LY H++ W L L + + L TP+H V A + IR+ LI
Sbjct: 527 HQLMLYDLYPPAHQTYLWKALERLVNEK-VSLGELTPVHKVAAEKRIGDIRMHLI 580
>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 276
Score = 25.0 bits (52), Expect = 9.2
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 453 DLDANLQILSLLLAHFRFDIIMRPCYIYI 367
+L ++ IL L+ H + + RPC +Y+
Sbjct: 110 ELYTHVPILPALIRHLQVTLNFRPCAVYL 138
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 25.0 bits (52), Expect = 9.2
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +1
Query: 100 NLKVNN*MAAMLQSASKVTINTGNVLNLIDIKKKAGQNVTEELSESIKLTLSE--WSTEN 273
NL++ N + S K ++ ++I+ K + QN+ E +I + S+ +S +
Sbjct: 292 NLRITNGTIDINVSPDKKSVFLSEEDSIIEFIKNSLQNLCESCGHAISCSRSQSIFSYSS 351
Query: 274 GKPLQNGSALSHEVPE 321
P +G + E+P+
Sbjct: 352 QIPDSSGDSTDQELPQ 367
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 460 NEDSTVALKESLENVFTALQTEYIDNVILSYNPD 561
NE+S + L L ++F E IDN++ S D
Sbjct: 344 NEESILHLLNILHSIFEYTVPEAIDNIVQSKTSD 377
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.0 bits (52), Expect = 9.2
Identities = 14/61 (22%), Positives = 26/61 (42%)
Frame = +1
Query: 190 IKKKAGQNVTEELSESIKLTLSEWSTENGKPLQNGSALSHEVPERSSHSTNLVDSTAETD 369
I+ Q+VT + + E+++ N LQN + PE+S+ + TD
Sbjct: 54 IQPNKSQSVTSPYVKQFTFSSKEYNSHNKHALQNSQLPLPKTPEKSTVHRPKANKVEVTD 113
Query: 370 V 372
+
Sbjct: 114 L 114
>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 316
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = -2
Query: 301 TPIHSVTASRFPYSIRIELI*YFLKAPQSHFAQLFSLCQSNSRH 170
+P H++ + S+R+ L+ + L HF FSL + ++
Sbjct: 168 SPAHALILWFYSTSLRVTLLTFLLSFTTLHFVNKFSLLLKDQQY 211
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,955
Number of Sequences: 5004
Number of extensions: 51840
Number of successful extensions: 183
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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