Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0842
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0267 - 23704249-23704401,23704476-23704780,23704967-237056... 30 1.8
11_01_0687 - 5651002-5651453,5651535-5651951,5652621-5653338,565... 29 4.1
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 29 4.1
04_01_0222 - 2805329-2805780,2805866-2806611,2806730-2806778,280... 29 4.1
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422... 28 5.4
08_02_1242 - 25513665-25513997,25514184-25514257,25514317-255144... 28 5.4
03_05_0855 + 28267231-28267603,28267725-28267966,28268071-282681... 28 5.4
04_01_0420 - 5561632-5563908 27 9.5
>05_05_0267 -
23704249-23704401,23704476-23704780,23704967-23705674,
23707772-23708114,23708300-23708374,23708625-23708675,
23708747-23708818,23708903-23709042,23709227-23709280,
23709446-23709553,23709769-23709864,23709946-23710005,
23710352-23710411,23711699-23711927
Length = 817
Score = 29.9 bits (64), Expect = 1.8
Identities = 34/161 (21%), Positives = 68/161 (42%), Gaps = 4/161 (2%)
Frame = +1
Query: 139 SASKVTINTGNVLNLIDIKKKAGQNVTEELSESIKLTLSEWSTE--NGKPLQNGSALSHE 312
S KV I+T NL + KKK + + ++ + + E + K ++ G +
Sbjct: 41 SEQKVEIHTKETQNLANTKKKQEEGKIKRNKKAPVQGVIQKDKECKSSKEIE-GKNIGGI 99
Query: 313 VPERSSHSTNLVDSTAETDVYITRPHDDIKTKMSEE--ERKNLKIGVKIFINEDSTVALK 486
E+ S S+ ++ E+D+ + H T+M E + NL ++ T+ L
Sbjct: 100 QKEKQSKSSMEIEEK-ESDI---KKHFKALTEMDTEIISQSNLTEINTAMLSSGITIELS 155
Query: 487 ESLENVFTALQTEYIDNVILSYNPDFLNTVEAGNEADLRNS 609
E ++ + +++ Y F+N+ GNE + N+
Sbjct: 156 EGERSIQSKQIQNMKQSILTEYETTFVNSGITGNEVGISNA 196
>11_01_0687 -
5651002-5651453,5651535-5651951,5652621-5653338,
5654106-5654417,5654482-5654814
Length = 743
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +1
Query: 487 ESLENVFTALQTEYIDNVILSYNPDFLNTVEAGNEADLRNSY 612
+S +N F A Y N I P F N AGN A N+Y
Sbjct: 691 DSKQNDFQANNPLYNGNPIAPMAPPFSNMYYAGNSAQAMNAY 732
>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 28.7 bits (61), Expect = 4.1
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Frame = +1
Query: 196 KKAGQNVTE------ELSESIKLTLSEWSTENGKPLQNGSALSHEVPERSSHSTNLVDST 357
++AG+N+T+ ELSE +K + ++ K + E + T + ST
Sbjct: 993 QQAGENLTQKETECQELSEKLKAAEEQAASYQAKATAAAEEVESVKVELEAFETEI--ST 1050
Query: 358 AETDVYITRPHDDIKTKMSEEERKNLKIGVKIFINEDSTVALKESLE 498
ET + +++KTK S E + + V+ + ++ ALKE L+
Sbjct: 1051 LETTI------EELKTKASNAESRAEQALVESAMMSETNQALKEDLD 1091
>04_01_0222 -
2805329-2805780,2805866-2806611,2806730-2806778,
2807031-2807748,2808513-2808824
Length = 758
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +1
Query: 487 ESLENVFTALQTEYIDNVILSYNPDFLNTVEAGNEADLRNSY 612
+S +N F A Y N I P F N AGN A N+Y
Sbjct: 706 DSKQNDFQANNPLYNGNPIAPMAPPFSNMYYAGNSAQAMNAY 747
>11_01_0533 +
4214900-4215162,4215986-4219043,4219613-4221539,
4221561-4222094,4222388-4222842,4223073-4223189,
4223319-4223477
Length = 2170
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/85 (24%), Positives = 34/85 (40%)
Frame = +1
Query: 130 MLQSASKVTINTGNVLNLIDIKKKAGQNVTEELSESIKLTLSEWSTENGKPLQNGSALSH 309
+++SA TIN L L D +T L + + +NG P G
Sbjct: 647 IIRSADSSTINQLRALLLSDSLSTKAHAITV-LGHVLVMASQRDLVQNGAPANKGLRSLI 705
Query: 310 EVPERSSHSTNLVDSTAETDVYITR 384
++ E S+ T +T D++ TR
Sbjct: 706 DILESSNEETQEQAATVVADIFSTR 730
>08_02_1242 -
25513665-25513997,25514184-25514257,25514317-25514422,
25514507-25514557,25514629-25514700,25514785-25514924,
25515109-25515162,25515328-25515435,25515652-25515747,
25515828-25515887,25516234-25516293,25517581-25517809
Length = 460
Score = 28.3 bits (60), Expect = 5.4
Identities = 34/161 (21%), Positives = 67/161 (41%), Gaps = 4/161 (2%)
Frame = +1
Query: 139 SASKVTINTGNVLNLIDIKKKAGQNVTEELSESIKLTLSEWSTE--NGKPLQNGSALSHE 312
S KV I+T NL + KKK + + ++ + + E + K ++ G +
Sbjct: 41 SEQKVEIHTKETQNLENTKKKQEEGKIKRNKKAPVQGVIQKDKECKSSKEIE-GKNIGGI 99
Query: 313 VPERSSHSTNLVDSTAETDVYITRPHDDIKTKMSEE--ERKNLKIGVKIFINEDSTVALK 486
E+ S S+ ++ E+D+ + H T+M E + NL ++ T+ L
Sbjct: 100 QKEKQSKSSMEIEEK-ESDI---KKHFKALTEMDTEIISQSNLTEINTAMLSSGITIELS 155
Query: 487 ESLENVFTALQTEYIDNVILSYNPDFLNTVEAGNEADLRNS 609
E ++ + +++ Y F+N+ GNE N+
Sbjct: 156 EGERSIHSKQIQNMKQSILTEYETTFVNSGITGNEVGRSNA 196
>03_05_0855 +
28267231-28267603,28267725-28267966,28268071-28268193,
28268507-28268623,28268739-28268921,28269017-28269158,
28269379-28269544,28270194-28270212
Length = 454
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = -1
Query: 566 KKSGLYERITLSMYSVCKAVNTFSSDSFNATVLSSLMKILTP 441
+ SGL + +S+ +C+A+ SSD+ A+ L++ I+ P
Sbjct: 169 RNSGLELGLWVSLAYLCQAIGLISSDAGRASFLTAFTVIVVP 210
>04_01_0420 - 5561632-5563908
Length = 758
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 605 FLRSASLPASTVFKKSGLYERITLSMYSVCKAVNTFSSDSFNAT 474
F+R + S + SG+ R L+MY VC A +++ AT
Sbjct: 226 FVRDVMVEGSNLGMASGMAPRAHLAMYEVCLADMCSATEMLTAT 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,172,719
Number of Sequences: 37544
Number of extensions: 292004
Number of successful extensions: 771
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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