Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0842
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.8  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 238 YFLKAPQSHFAQLFS 194
           YF   P  HFAQLF+
Sbjct: 454 YFFICPSIHFAQLFA 468


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 238 YFLKAPQSHFAQLFS 194
           YF   P  HFAQLF+
Sbjct: 454 YFFICPSIHFAQLFA 468


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 439 IGVKIFINEDSTVALKESLENVFTALQ 519
           +G+K+   E+ T  +K+SL  + +ALQ
Sbjct: 277 LGLKLINAENETAHIKDSLIVLTSALQ 303


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -2

Query: 238 YFLKAPQSHFAQLFSLCQSNSRHFQYLSSL*KH 140
           Y  +  Q H     S   SN   F Y SSL  H
Sbjct: 98  YLQQQQQQHHQDSSSEHASNQERFGYFSSLKDH 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,574
Number of Sequences: 438
Number of extensions: 3467
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)