Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0840
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    29   0.56 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   1.7  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    26   3.9  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   5.2  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.1  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.1  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   9.1  

>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = +2

Query: 152 ETLNTFRW**TIMDKIKLKINDKHYTVD-GKFGPDVSLNEFIRNVAELRGT---KAMCHE 319
           +T   +RW     +K ++K   + YTVD  K GP V L+  I+   E   T   +  C E
Sbjct: 22  KTFEIYRW---NPEKPEVKPKLQKYTVDLTKCGPMV-LDALIKIKNEQDPTLTFRRSCRE 77

Query: 320 GGCGACVVAVRAS 358
           G CG+C + +  S
Sbjct: 78  GICGSCAMNINGS 90


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 302 KAMCHEGGCGACVVAVRASLPPNNEMKTFAVNS 400
           K  CH G CGAC   + A        KT+  +S
Sbjct: 354 KKRCHSGLCGACFEPINAKCYCGLHSKTYPCSS 386


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 521 CGFCTPGWVMNMYSIYQSKNKKLSQKQIENSFA 619
           CGF  P    + Y I+   NK+L  K IENS+A
Sbjct: 652 CGF-NPDCFRSDY-IFPPDNKELYDKDIENSYA 682


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 497 LANFNGTQCGFCTPGWVMNMYSIYQSKNKK 586
           +AN    QC  C   + + M+ + Q KN K
Sbjct: 737 MANLENLQCAACQSTYKVEMHHVRQMKNLK 766


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 151 IHPLKLEFYKLSKLRFLGKTT 89
           + PLK +F  + KL+ +GK T
Sbjct: 64  LEPLKRDFSSMDKLKLIGKIT 84


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 222 CLSLIFNFILSMIVYYHRNVFNVSYIH 142
           CL L F +  +  ++ HR  F   Y H
Sbjct: 177 CLQLFFKWQYAQFLFIHRESFLFEYFH 203


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 280 IPDELVERHIRTELAVHSVMFIVNF 206
           IPDE V++H+R E  +H ++ + NF
Sbjct: 81  IPDENVKKHVR-ETLLHLLVSLDNF 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,061
Number of Sequences: 5004
Number of extensions: 54362
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)