Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0840
(633 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1146 + 10756897-10757065,10763869-10765521,10765638-107659... 118 4e-27
03_06_0252 - 32656068-32656276,32656361-32656550,32656682-326567... 112 2e-25
03_06_0253 - 32666152-32666360,32666443-32666632,32666764-326668... 112 3e-25
10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,234... 108 3e-24
03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934... 107 1e-23
07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,350... 79 4e-15
07_01_1149 + 10789733-10791209,10791326-10791588,10791745-107919... 43 2e-04
03_02_0917 + 12372122-12372422,12372487-12372524,12373103-123731... 29 2.3
08_02_0601 + 19177129-19177245,19178231-19179103 29 4.1
06_01_0044 + 415462-416058 27 9.4
>07_01_1146 +
10756897-10757065,10763869-10765521,10765638-10765900,
10766057-10766266,10766818-10767036,10767379-10768344,
10768575-10768670,10768772-10768870,10769349-10769538,
10769623-10769855
Length = 1365
Score = 118 bits (284), Expect = 4e-27
Identities = 58/139 (41%), Positives = 81/139 (58%), Gaps = 11/139 (7%)
Frame = +2
Query: 248 PDVSLNEFIRNVAELRGTKAMCHEGGCGACVVAVRASLPPNNEMKTFAVNSCLVSILSCH 427
P +L EFIR +G K C EGGCGACV+ + P +E+ F +SCL + S H
Sbjct: 33 PSTTLLEFIRTRTPFKGPKLGCGEGGCGACVILIAKYNPKTDEVTEFNASSCLTLLYSIH 92
Query: 428 EWEVITVEGIGNKSIGYHEIQTRLANFNGTQCGFCTPGWVMNMYS--IYQSKNK------ 583
+IT EG+GN G+H IQ R++ F+ +QCGFCTPG M+++S + K+K
Sbjct: 93 FCSIITTEGLGNTKDGFHAIQKRMSGFHASQCGFCTPGMCMSIFSSLVNADKSKKPDPPK 152
Query: 584 ---KLSQKQIENSFAGNIC 631
KLS + E SF+GN+C
Sbjct: 153 GFSKLSVSEAERSFSGNMC 171
>03_06_0252 -
32656068-32656276,32656361-32656550,32656682-32656780,
32656917-32657012,32657200-32658153,32658476-32658694,
32658911-32659120,32659241-32659503,32659605-32661281,
32663639-32663792
Length = 1356
Score = 112 bits (270), Expect = 2e-25
Identities = 59/157 (37%), Positives = 85/157 (54%), Gaps = 12/157 (7%)
Frame = +2
Query: 197 IKLKINDKHYTVDGKFGPDVSLNEFIRNVAELRGTKAMCHEGGCGACVVAVRASLPPNNE 376
+ + +N + Y G P +L EF+R +RG K C EGGCGACVV V +E
Sbjct: 12 VVVAVNGERYEAVG-VDPSTTLLEFLRTRTPVRGPKLGCGEGGCGACVVVVSKYDAVADE 70
Query: 377 MKTFAVNSCLVSILSCHEWEVITVEGIGNKSIGYHEIQTRLANFNGTQCGFCTPGWVMNM 556
+ F+ +SCL + S H V T EGIGN G+H +Q RL+ F+ +QCGFCTPG M++
Sbjct: 71 VTEFSASSCLTLLGSLHHCAVTTSEGIGNSRDGFHAVQRRLSGFHASQCGFCTPGMCMSI 130
Query: 557 YSIYQSKNK------------KLSQKQIENSFAGNIC 631
YS +K K++ + E + +GN+C
Sbjct: 131 YSALAKADKASGRPAPPTGFSKITAAEAEKAVSGNLC 167
>03_06_0253 -
32666152-32666360,32666443-32666632,32666764-32666862,
32666999-32667094,32667408-32668361,32668683-32668901,
32669282-32669491,32669617-32669879,32670041-32671717,
32672702-32672852
Length = 1355
Score = 112 bits (269), Expect = 3e-25
Identities = 59/157 (37%), Positives = 85/157 (54%), Gaps = 12/157 (7%)
Frame = +2
Query: 197 IKLKINDKHYTVDGKFGPDVSLNEFIRNVAELRGTKAMCHEGGCGACVVAVRASLPPNNE 376
+ + +N + Y G P +L EF+R +RG K C EGGCGACVV V +E
Sbjct: 11 VVVTVNGERYEAVG-VDPSTTLLEFLRTRTPVRGPKLGCGEGGCGACVVVVSKYDAVADE 69
Query: 377 MKTFAVNSCLVSILSCHEWEVITVEGIGNKSIGYHEIQTRLANFNGTQCGFCTPGWVMNM 556
+ F+ +SCL + S H V T EGIGN G+H +Q RL+ F+ +QCGFCTPG M++
Sbjct: 70 VTEFSASSCLTLLGSLHHCAVTTSEGIGNSRDGFHAVQRRLSGFHASQCGFCTPGMCMSI 129
Query: 557 YSIYQSKNK------------KLSQKQIENSFAGNIC 631
YS ++ KL+ + E + +GN+C
Sbjct: 130 YSALAKADRCSSRPSPPPGFSKLTAAEAEKAVSGNLC 166
>10_01_0217 +
2337950-2338085,2340766-2342436,2342636-2342898,
2343027-2343236,2343436-2343654,2344038-2345000,
2345279-2345374,2345482-2345580,2345953-2346142,
2346594-2346823
Length = 1358
Score = 108 bits (260), Expect = 3e-24
Identities = 52/128 (40%), Positives = 74/128 (57%)
Frame = +2
Query: 209 INDKHYTVDGKFGPDVSLNEFIRNVAELRGTKAMCHEGGCGACVVAVRASLPPNNEMKTF 388
+N + Y G P ++L EF+R RG K C EGGCGAC V V +E+ +F
Sbjct: 10 VNGERYEAVG-VDPSMTLLEFLRTRTPFRGPKLGCGEGGCGACAVVVSKYDAAADEVTSF 68
Query: 389 AVNSCLVSILSCHEWEVITVEGIGNKSIGYHEIQTRLANFNGTQCGFCTPGWVMNMYSIY 568
+ +SCL + S H V T EGIGN G+H +Q RLA F+ +QCGFCTPG ++++S
Sbjct: 69 SASSCLTLLGSLHHCAVTTSEGIGNSRDGFHPVQRRLAGFHASQCGFCTPGMCVSIFSAL 128
Query: 569 QSKNKKLS 592
+ ++ S
Sbjct: 129 ANADRAAS 136
>03_04_0157 +
17791540-17791681,17792809-17792908,17793386-17793477,
17793562-17793620,17794135-17795637,17796478-17796720,
17796831-17797145,17797571-17797573,17798399-17798638,
17798975-17799259,17799335-17799556,17800105-17800266,
17800411-17800545,17802452-17802688,17802787-17802960,
17803692-17803934
Length = 1384
Score = 107 bits (256), Expect = 1e-23
Identities = 57/140 (40%), Positives = 85/140 (60%), Gaps = 14/140 (10%)
Frame = +2
Query: 254 VSLNEFIRNVAELRGTKAMCHEGGCGACVVAVRASLPPNNEMKTFAVNSCLVSILSCHEW 433
++L +++R++ L GTK C EGGCGAC V V + + FA+N+CL + S
Sbjct: 40 LTLLQYLRDIG-LPGTKLGCGEGGCGACTVMVSCYDQTTKKTQHFAINACLAPLYSVEGM 98
Query: 434 EVITVEGIGNKSIGY-----HEIQT---------RLANFNGTQCGFCTPGWVMNMYSIYQ 571
+ITVEGIGN+ E+ T RLA +G+QCGFCTPG+VM+MY++ +
Sbjct: 99 HIITVEGIGNRQRAVWNYLCDEVVTCWLKTLRKERLAMAHGSQCGFCTPGFVMSMYALLR 158
Query: 572 SKNKKLSQKQIENSFAGNIC 631
S + +++QIE+S AGN+C
Sbjct: 159 SSEQPPTEEQIEDSLAGNLC 178
>07_01_0464 -
3504264-3504475,3504842-3505031,3505310-3505408,
3505561-3505653,3505926-3506891,3507267-3507485,
3508038-3508247,3508371-3508630,3508956-3510737,
3510796-3511009
Length = 1414
Score = 78.6 bits (185), Expect = 4e-15
Identities = 55/159 (34%), Positives = 73/159 (45%), Gaps = 31/159 (19%)
Frame = +2
Query: 248 PDVSLNEFIRNVAELRGTKAMCHEG------------------GCGACVVAVRASLPPNN 373
P SL EF+R+ G K C EG GCGACVV V A +
Sbjct: 30 PGESLLEFLRSRTRFTGAKLGCGEGKATPQPTALPPPRLLCFRGCGACVVVVSAYDAEAD 89
Query: 374 EMKTFAVNSCLVSILSCHEWEVITVEGIGNKSIGYHEIQTRLANFNGTQCGFCTPGWVMN 553
E+ AV+SCL H V T EG+G+ G H + RLA F+ +QCGFCTPG M+
Sbjct: 90 EVAHAAVSSCLTLARGLHHRAVTTTEGLGSSRRGLHALHERLAGFHASQCGFCTPGVCMS 149
Query: 554 M---YSIYQSKNKK----------LSQKQIENSFAGNIC 631
+ + + KK L+ + E + AGN+C
Sbjct: 150 LAGALAAAEGNGKKAASAAEGFSRLTAAEAERAVAGNLC 188
>07_01_1149 +
10789733-10791209,10791326-10791588,10791745-10791954,
10792398-10792475,10792505-10792705,10792768-10792908,
10794749-10795714,10797824-10797919,10798450-10798638,
10798849-10798956
Length = 1242
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 11/56 (19%)
Frame = +2
Query: 497 LANFNGTQCGFCTPGWVMNMYS--IYQSKNK---------KLSQKQIENSFAGNIC 631
++ F+ +QCGFCTPG M+++S + K+K KLS + E SF+GN+C
Sbjct: 1 MSGFHASQCGFCTPGMCMSIFSSLVNADKSKKPAPPKGFSKLSISEAERSFSGNMC 56
>03_02_0917 +
12372122-12372422,12372487-12372524,12373103-12373186,
12373796-12374504,12374641-12374729,12374834-12374903,
12374977-12375060,12375097-12375239,12375337-12375418,
12375605-12375687,12375769-12375835,12376287-12376376,
12377631-12377737,12377862-12377969
Length = 684
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 404 LVSILSCHEWEVITVEGIGNKSIGYHEIQTRLANFNGTQCGFCTPGW 544
L+ +L C EV+ + + +K + ++ +L +GT+C F T W
Sbjct: 112 LLKVLHCKTEEVVNTQVLCSKKVQNVKV-VKLIPLSGTECYFTTKAW 157
>08_02_0601 + 19177129-19177245,19178231-19179103
Length = 329
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/22 (68%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Frame = -3
Query: 352 SDGDDAGSTAA--LVTHRLRTP 293
+DGDD STAA LVTH L TP
Sbjct: 289 NDGDDDDSTAAIDLVTHTLTTP 310
>06_01_0044 + 415462-416058
Length = 198
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 509 NGTQCGFCTPGWVMNMYSIYQSKNK 583
NG C FC PG V++ Y K +
Sbjct: 158 NGNDCAFCPPGRVLHPAEFYCGKQQ 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,320,863
Number of Sequences: 37544
Number of extensions: 350137
Number of successful extensions: 810
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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