Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0840
         (633 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)           148   3e-36
SB_56571| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   8e-10
SB_48390| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_47599| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_37831| Best HMM Match : MAM (HMM E-Value=0)                         29   4.1  
SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)                      28   7.2  
SB_22045| Best HMM Match : Amelogenin (HMM E-Value=0.23)               27   9.6  

>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
          Length = 1644

 Score =  148 bits (359), Expect = 3e-36
 Identities = 74/141 (52%), Positives = 92/141 (65%)
 Frame = +2

Query: 209 INDKHYTVDGKFGPDVSLNEFIRNVAELRGTKAMCHEGGCGACVVAVRASLPPNNEMKTF 388
           +N   YTV        SLNE+IRN   L+GTK MC E GCG CVVAV    P   +  T 
Sbjct: 164 VNGAQYTVHNP-DAHTSLNEWIRNQPGLKGTKVMCKEAGCGVCVVAVTKKDPTTGKDVTK 222

Query: 389 AVNSCLVSILSCHEWEVITVEGIGNKSIGYHEIQTRLANFNGTQCGFCTPGWVMNMYSIY 568
           AVNSCL  + + +E  V T EGIGN+  G+H IQ RLA  NG+QCGFC+PG VMNMYS+ 
Sbjct: 223 AVNSCLFPLYAANESHVTTTEGIGNRKKGFHVIQKRLAEHNGSQCGFCSPGMVMNMYSLL 282

Query: 569 QSKNKKLSQKQIENSFAGNIC 631
           + ++ K S+++IE SF GNIC
Sbjct: 283 K-EDPKPSKEKIEGSFDGNIC 302


>SB_56571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 25/46 (54%), Positives = 38/46 (82%)
 Frame = +2

Query: 494 RLANFNGTQCGFCTPGWVMNMYSIYQSKNKKLSQKQIENSFAGNIC 631
           R+AN +G+QCGFCTPG VM+MY++ ++ N   SQK++E++F GN+C
Sbjct: 19  RIANAHGSQCGFCTPGIVMSMYTLLRN-NPLPSQKELESAFEGNLC 63


>SB_48390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -3

Query: 289 LCHIPDELVERHIRTELAVHSVMFIVNF*LYFVHDCLLPPECV*CFIHPLKLEFYKL 119
           L H+    V+RH+    A+H ++ +     +F+  C LP E    F    K E YKL
Sbjct: 94  LYHLRRRTVQRHVNNTKAMHRLLRMCALAAFFLSICWLPTE---TFFILYKFEAYKL 147


>SB_47599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = +2

Query: 272 IRNVAELRGTKAMCHEGGCGACVVAVRASLPPNNE---MKTFAVNSCLVSILSCHEWE 436
           +RN   L      C   GCGACVV  R  L   NE   MK+   + C    L  H WE
Sbjct: 232 MRNRKWLELPNMPCARFGCGACVVNNRMFLLGGNEKLKMKS-CCDRCDAFDLVSHSWE 288


>SB_37831| Best HMM Match : MAM (HMM E-Value=0)
          Length = 563

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -1

Query: 303 FVPRSSATFLMNSLSDTSGPNLPSTV*CLSLIFNFILSMIVYYH 172
           ++  S ++ ++NS +  + PNLP+ V C+   ++   S I   H
Sbjct: 330 YIETSGSSLVVNSKARLNSPNLPANVTCMQFYYHMRGSTIGQLH 373


>SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 182 TIMDKIKLKINDKHYTVDGKFGPDVSLNEFIRNV--AELRGTKAMCHEGG 325
           T+  K +++  +KHY     F    S N F+R+V  A L  T   CH  G
Sbjct: 458 TVFSKAEMRYLEKHYRCMKCFSVYSSRNNFLRHVSKAHLYDTYYQCHMCG 507


>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 2411

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +2

Query: 227 TVDGKFGPDVS--LNEFIRNVAELRGTKAM--CHEGGCGACVVA 346
           TVD   G D S  LNE +      R  K++   H G CGAC +A
Sbjct: 225 TVDTVCGTDKSSYLNECVMKARACRKEKSVTVAHRGFCGACSLA 268


>SB_22045| Best HMM Match : Amelogenin (HMM E-Value=0.23)
          Length = 149

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 300 RRRCVTRAAVEPASSPSEHLYRPTTK*RHSPLIRA 404
           + R +T AA  P   P  H YRP T    SP+++A
Sbjct: 96  QHRPITSAAQSPV--PPNHQYRPITSTPQSPVLQA 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,989,978
Number of Sequences: 59808
Number of extensions: 406365
Number of successful extensions: 801
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)