Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0840
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.3  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.3  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.3  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.3  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.3  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   4.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.9  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   9.9  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -1

Query: 594 WLNFLFFDWYILYIFMTHPG 535
           W+  LF  W    + M+ PG
Sbjct: 294 WIKMLFLQWLPCLLRMSRPG 313


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -1

Query: 594 WLNFLFFDWYILYIFMTHPG 535
           W+  LF  W    + M+ PG
Sbjct: 294 WIKMLFLQWLPCLLRMSRPG 313


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -1

Query: 594 WLNFLFFDWYILYIFMTHPG 535
           W+  LF  W    + M+ PG
Sbjct: 294 WIKMLFLQWLPCLLRMSRPG 313


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -1

Query: 594 WLNFLFFDWYILYIFMTHPG 535
           W+  LF  W    + M+ PG
Sbjct: 294 WIKMLFLQWLPCLLRMSRPG 313


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -1

Query: 594 WLNFLFFDWYILYIFMTHPG 535
           W+  LF  W    + M+ PG
Sbjct: 294 WIKMLFLQWLPCLLRMSRPG 313


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -1

Query: 594 WLNFLFFDWYILYIFMTHPG 535
           W+  LF  W    + M+ PG
Sbjct: 294 WIKMLFLQWLPCLLRMSRPG 313


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -1

Query: 594 WLNFLFFDWYILYIFMTHPG 535
           W+  LF  W    + M+ PG
Sbjct: 362 WIKMLFLQWLPCLLRMSRPG 381


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -1

Query: 594 WLNFLFFDWYILYIFMTHPG 535
           W+  LF  W    + M+ PG
Sbjct: 362 WIKMLFLQWLPCLLRMSRPG 381


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 5/24 (20%), Positives = 16/24 (66%)
 Frame = -1

Query: 237 PSTV*CLSLIFNFILSMIVYYHRN 166
           P+ + CL ++    ++ ++++HR+
Sbjct: 519 PAVISCLGIVATMAVACLLFHHRD 542


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 5/24 (20%), Positives = 16/24 (66%)
 Frame = -1

Query: 237 PSTV*CLSLIFNFILSMIVYYHRN 166
           P+ + CL ++    ++ ++++HR+
Sbjct: 609 PAVISCLGIVATMAVACLLFHHRD 632


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 611 SFQFVFGLIFCFSIGIYYT 555
           SF F+F  I  F++  Y+T
Sbjct: 283 SFAFIFATIIQFAVVHYFT 301


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -2

Query: 257 THPDRTCRPQCNVYR*FLTLFCP*LFITTGMCLMF 153
           THP+ T   QC  +  F T      +   GM +M+
Sbjct: 179 THPNVTWYSQCVTFNAFPTYTHEITYSLFGMIMMY 213


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/28 (25%), Positives = 13/28 (46%)
 Frame = +3

Query: 459 VTNQLVTMKFKLDWLISMVHNVGFVHPD 542
           + N+ + +   +   +   HN G VH D
Sbjct: 153 IKNERICILKSITCALQFCHNAGIVHAD 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,378
Number of Sequences: 438
Number of extensions: 3898
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)