Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0839
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    27   2.3  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    27   3.0  
SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6 |Schizosac...    26   5.3  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   7.0  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    25   9.3  

>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
 Frame = +3

Query: 120 ITLTEPNLGK-RQFQLNNMVNEA--YKNSISFAEIQNLPEKSPVDRLFKIDMASKLRNVD 290
           I LTE    +  +  L+N+  E   + N   F  I     +SP+DR   ID  +    V+
Sbjct: 300 IDLTEQEKKQPNESNLSNLKIETVLFSNCTVFLLIDTREIRSPLDRNLIIDKLTNDFGVN 359

Query: 291 FIIQNLRDEDMLYVSRALKS 350
             +++L   D L+V+R ++S
Sbjct: 360 CQVRSLELGDALWVARDMES 379


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 489 CQKFYQFYKEKEFHYAMKFFVHCSQDYINSEVRDIL 596
           C K     KEK+ +  +K     +QDY  +E  DIL
Sbjct: 95  CYKEISISKEKKINSLLKLVRESAQDYTINEENDIL 130


>SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 136

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 315 EDMLYVSRALKSKWLLDPAHEAMMTPQWLEDELFPTMFTTAVSKMKNWL 461
           E +L VSR +KS WL +    +  T  + E +L     T  ++K++N L
Sbjct: 68  EQLLDVSRQIKSYWLTNSLSTSFPTVDYSEPDLEKVKRT--LTKLQNHL 114


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 402 EDELFPTMFTTAVSKMKNWLYLNLKD 479
           E+E+   +  +AV   K W+YL+ KD
Sbjct: 62  EEEMRTLLVASAVKDAKGWVYLSGKD 87


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 261 DMASKLRNVDFIIQNLRDEDMLYVSRALKSKWLLD 365
           D+   L  + ++++N  DED  Y+  ALK + L+D
Sbjct: 632 DVLLDLDGLQYLVKN--DEDYSYLQEALKDEPLMD 664


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,815
Number of Sequences: 5004
Number of extensions: 48925
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)