Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0839
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0926 + 7324145-7324561,7324773-7324778,7325255-7325311,732... 32 0.45
02_05_0602 + 30283893-30284170,30286259-30286305,30286534-302875... 31 0.78
06_03_0267 + 18970578-18972464 30 1.8
03_05_0300 - 22894282-22894628,22894713-22894809,22896062-228962... 29 4.1
02_03_0218 + 16526082-16526375,16526606-16526725,16528078-165282... 29 4.1
03_02_0861 - 11873026-11874009,11874140-11874180,11876050-11876314 28 5.5
11_01_0036 + 268028-268168,268734-268839,268920-269031,269126-26... 28 7.2
04_04_1322 + 32640414-32642327 28 7.2
11_01_0314 + 2339241-2339728,2342720-2343608 27 9.6
05_02_0021 - 5674587-5674799,5674898-5675031,5675129-5675207,567... 27 9.6
02_04_0335 + 22117902-22119869 27 9.6
>01_01_0926 +
7324145-7324561,7324773-7324778,7325255-7325311,
7325572-7325661,7325938-7325982,7326088-7326142,
7326245-7326288,7326401-7326790,7327276-7327541,
7328292-7328430,7328514-7328564,7329158-7329642,
7329724-7330327,7330717-7331025
Length = 985
Score = 31.9 bits (69), Expect = 0.45
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -2
Query: 458 PVLHLADSRCK-HCRKQFIFQPLGRHHSLMS-RVQQPLRLQCSTHIQHILVSEVLDYEVY 285
P + L D K H + F Q L R + S + P ++ C H+ V+E LDY+ +
Sbjct: 382 PTVLLVDCPTKYHMHELFSLQSLIRFYEDSSEQAGSPKKVNCVIHLGPSSVTEALDYQNW 441
Query: 284 VSQFG 270
+ +FG
Sbjct: 442 MRKFG 446
>02_05_0602 +
30283893-30284170,30286259-30286305,30286534-30287510,
30287611-30287920,30288561-30290197
Length = 1082
Score = 31.1 bits (67), Expect = 0.78
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Frame = +3
Query: 261 DMASKLRNVDFIIQNLRDEDMLYVSRALKSKWLLDPAHEAMMTPQWLEDELFPTMFTTAV 440
++ S ++++ +I+NL D + AL S D A +A+ +LED+ M T AV
Sbjct: 175 EILSITQDLESVIENLCDYIGRVPTSALGSNAYTDGAVKALSVRGFLEDD----MLTNAV 230
Query: 441 SKMKNWLYLNLKDELRCQKFYQ--FYKEKEF 527
+ M N Y + + R +F Q +++ EF
Sbjct: 231 NSMPNRKYFHDSNMPRLVEFLQGMYHESDEF 261
>06_03_0267 + 18970578-18972464
Length = 628
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 4 GCRNSARGNNRIKIKRSGNKFCYK 75
GCR +ARG + + IK G K C K
Sbjct: 328 GCRKAARGKSGLCIKHGGGKRCQK 351
>03_05_0300 -
22894282-22894628,22894713-22894809,22896062-22896200,
22896923-22897230
Length = 296
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +3
Query: 225 PEKSPVDRLFKIDMASKLRNVDFIIQNLRDEDMLYVSRALKSKWLLDPAHE 377
P SP + +++ +L +V +++L+ D++YVS L S +DP+ E
Sbjct: 95 PSSSPSNFRVTLNLQGELAHVS--LKHLKQNDLVYVSGLLNSYHKVDPSGE 143
>02_03_0218 +
16526082-16526375,16526606-16526725,16528078-16528238,
16528601-16528634,16529296-16529398,16529784-16529963,
16530726-16530742
Length = 302
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 444 KMKNWLYLNLKDELRCQKFYQFYKE 518
K+K LYLN + E C+K+ + Y+E
Sbjct: 129 KLKMLLYLNAEHEAWCKKYMELYQE 153
>03_02_0861 - 11873026-11874009,11874140-11874180,11876050-11876314
Length = 429
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 126 LTEPNLGKRQFQLNNMVNEAYKNSISFAEIQNLPEKSPVDR 248
L +LG+R F + ++N +S AE +PE S + R
Sbjct: 134 LPRNHLGRRSFMSKPVYPLVFRNPVSEAEASGMPEASNIGR 174
>11_01_0036 +
268028-268168,268734-268839,268920-269031,269126-269241,
269321-269399,269476-269614,269689-269747,269924-270218,
270303-270362,270502-270933
Length = 512
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 240 VDRLFKIDMASKLRNVDFIIQNLRDEDMLYVSRALK 347
+DR F + K+ VD Q R+E M Y + LK
Sbjct: 183 IDRQFSEETIPKMMEVDKSTQGTREEQMFYNRKTLK 218
>04_04_1322 + 32640414-32642327
Length = 637
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 1 PGCRNSARGNNRIKIKRSGNKFC 69
PGC +ARG + IK G K C
Sbjct: 314 PGCTKAARGRSGFCIKHGGGKRC 336
>11_01_0314 + 2339241-2339728,2342720-2343608
Length = 458
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 360 TTTSTSVLDSHTTYPRLGGFGL*SLRF 280
T T+TS + TT PRLG L +RF
Sbjct: 35 TATTTSTTTTTTTPPRLGAVALSDIRF 61
>05_02_0021 -
5674587-5674799,5674898-5675031,5675129-5675207,
5675737-5675799,5676420-5676482,5676557-5676673,
5676756-5676803,5676918-5677103,5677948-5678047,
5678323-5678562,5678583-5678686
Length = 448
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/69 (23%), Positives = 28/69 (40%)
Frame = +3
Query: 102 IPMMCPITLTEPNLGKRQFQLNNMVNEAYKNSISFAEIQNLPEKSPVDRLFKIDMASKLR 281
+P+ P T + G + S SFAE PE + + +D+A +L
Sbjct: 335 VPVKAPFTDSTFEFGNSSCNPPDSFGYIPTTSKSFAERLMAPENEDLVVMLSLDLAEELE 394
Query: 282 NVDFIIQNL 308
+D + Q +
Sbjct: 395 TIDEVYQQI 403
>02_04_0335 + 22117902-22119869
Length = 655
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 1 PGCRNSARGNNRIKIKRSGNKFC 69
PGC SARG +K G K C
Sbjct: 470 PGCGKSARGRTDCCVKHGGGKRC 492
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,221,445
Number of Sequences: 37544
Number of extensions: 274422
Number of successful extensions: 690
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -