Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0839
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42797| Best HMM Match : Peptidase_A16_N (HMM E-Value=2e-05)         30   1.4  
SB_12008| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   3.2  
SB_37452| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   4.2  
SB_28976| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   4.2  
SB_59804| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_42797| Best HMM Match : Peptidase_A16_N (HMM E-Value=2e-05)
          Length = 668

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 168 NMVNEAYKNSISFAEIQNLPEKSPVDRLFKIDMASKLRNVDFI 296
           N V+E+ K+ I F  I+ +     +DR+ +ID   ++  VD I
Sbjct: 623 NEVHESLKDGIVFTVIERIDRIERIDRIDRIDRIDRIDRVDSI 665


>SB_12008| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 979

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/79 (24%), Positives = 32/79 (40%)
 Frame = +3

Query: 237 PVDRLFKIDMASKLRNVDFIIQNLRDEDMLYVSRALKSKWLLDPAHEAMMTPQWLEDELF 416
           P +RLF         N+ F  +N+RD D  +  R  K     +  H     P ++    F
Sbjct: 486 PFNRLFVPVFRLSGENLSFEFENIRDSDARWAVRGEKD----NTRHAKFYQPGYMPLNAF 541

Query: 417 PTMFTTAVSKMKNWLYLNL 473
               +  V K+  W +++L
Sbjct: 542 VGFVSRQVDKICQWRFVSL 560


>SB_37452| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 211

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 434 RCKHCRKQFIFQPLGRHHSLMSRVQQPLRLQC 339
           +C HC K F++    +HH+    V      QC
Sbjct: 117 KCSHCEKDFVYLQSLKHHACTHSVIPAKSFQC 148


>SB_28976| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 277

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 434 RCKHCRKQFIFQPLGRHHSLMSRVQQPLRLQC 339
           +C HC K F++    +HH+    V      QC
Sbjct: 203 KCSHCEKDFVYLQSLKHHACTHSVIPAKSFQC 234


>SB_59804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 676

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 471 LKDELRCQKFYQFYKEKEFHYAMKFFVHCSQDYINSEVRDILGRLSPQHFKILCEK 638
           LKD  +  ++Y    + E     K FV CS+DY   E   ++    P +  I+  K
Sbjct: 607 LKDAAQSLQYYSDANDAESWMKEKMFVVCSEDYGRDEQSAVVNSPPPPNPTIVLFK 662


>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2332

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -2

Query: 377  LMSRVQQPLRLQCSTHIQHILVSEV 303
            L++R Q+PL  +CS H+  +L+SE+
Sbjct: 1991 LLNR-QEPLGRECSQHMSRVLISEL 2014


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,075,038
Number of Sequences: 59808
Number of extensions: 335042
Number of successful extensions: 881
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)