Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0839
         (642 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles ...    26   0.88 
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    24   3.6  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    23   8.2  

>M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 442

 Score = 26.2 bits (55), Expect = 0.88
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 588 HGLHCLCNPENNVRKIS*HNEILFLCRTDRIFDN 487
           H  HC     ++ R++  +N++L+LC+    F N
Sbjct: 60  HHTHCTGLSRDSTRELGRNNQLLWLCKNCNEFRN 93


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 399 LEDELFPTMFTTAVSKMKNWLYLNLKDELR 488
           ++ E FP    T V K+ +W Y   K +LR
Sbjct: 154 IDVEYFPYDVQTCVLKLGSWTYDGFKVDLR 183


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 394 SGWKMNCFLQCLQ 432
           SG KM+ FLQC++
Sbjct: 2   SGGKMSAFLQCIE 14


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 623,581
Number of Sequences: 2352
Number of extensions: 11304
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63141405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)