Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0839
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40059-5|AAA81140.1|  191|Caenorhabditis elegans Hypothetical pr...    32   0.30 
U70851-2|AAM97996.1|  671|Caenorhabditis elegans Osmotic avoidan...    31   0.70 
U70851-1|AAM97997.1|  699|Caenorhabditis elegans Osmotic avoidan...    31   0.70 
D38632-1|BAA07612.1|  672|Caenorhabditis elegans OSM-3 (kinesin ...    31   0.70 
D14968-1|BAA20996.1|  397|Caenorhabditis elegans kinesin-like pr...    31   0.70 
AF149285-1|AAF99084.1|  672|Caenorhabditis elegans Osm-3 protein.      31   0.70 
U41024-1|AAA82345.2|  679|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF106591-2|AAC78238.1|  263|Caenorhabditis elegans Hypothetical ...    28   4.9  
AF022978-3|AAG24182.2|  403|Caenorhabditis elegans Hypothetical ...    28   6.5  

>U40059-5|AAA81140.1|  191|Caenorhabditis elegans Hypothetical
           protein K03C7.3 protein.
          Length = 191

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -3

Query: 628 RILKCCGDKRPKMSRTSLFM*S*EQCTKNFIA**NSFSL 512
           R++ CCGD+ P ++  +LF    EQCT+  +   N F L
Sbjct: 147 RMMNCCGDQCPPVAALALFQDPDEQCTEIAMQKSNDFFL 185


>U70851-2|AAM97996.1|  671|Caenorhabditis elegans Osmotic avoidance
           abnormal protein3, isoform a protein.
          Length = 671

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 537 MKFFVHCSQ-DYINSEVRDILGRLSPQHFKI 626
           +KF VHCS  +  N EVRD+LG  + Q  +I
Sbjct: 99  VKFLVHCSYLEIYNEEVRDLLGADNKQKLEI 129


>U70851-1|AAM97997.1|  699|Caenorhabditis elegans Osmotic avoidance
           abnormal protein3, isoform b protein.
          Length = 699

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 537 MKFFVHCSQ-DYINSEVRDILGRLSPQHFKI 626
           +KF VHCS  +  N EVRD+LG  + Q  +I
Sbjct: 127 VKFLVHCSYLEIYNEEVRDLLGADNKQKLEI 157


>D38632-1|BAA07612.1|  672|Caenorhabditis elegans OSM-3 (kinesin
           protein) protein.
          Length = 672

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 537 MKFFVHCSQ-DYINSEVRDILGRLSPQHFKI 626
           +KF VHCS  +  N EVRD+LG  + Q  +I
Sbjct: 170 VKFLVHCSYLEIYNEEVRDLLGADNKQKLEI 200


>D14968-1|BAA20996.1|  397|Caenorhabditis elegans kinesin-like
           protein protein.
          Length = 397

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 537 MKFFVHCSQ-DYINSEVRDILGRLSPQHFKI 626
           +KF VHCS  +  N EVRD+LG  + Q  +I
Sbjct: 170 VKFLVHCSYLEIYNEEVRDLLGADNKQKLEI 200


>AF149285-1|AAF99084.1|  672|Caenorhabditis elegans Osm-3 protein.
          Length = 672

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 537 MKFFVHCSQ-DYINSEVRDILGRLSPQHFKI 626
           +KF VHCS  +  N EVRD+LG  + Q  +I
Sbjct: 99  VKFLVHCSYLEIYNEEVRDLLGADNKQKLEI 129


>U41024-1|AAA82345.2|  679|Caenorhabditis elegans Hypothetical
           protein T14G11.3 protein.
          Length = 679

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
 Frame = +3

Query: 99  TIPMMCPITLTEPNLGKRQFQLNNMVNEAYKNSISFAEIQNLPEKSPVDRLFKIDMASKL 278
           T P++     T   L  +  ++N +VN++ + S    + ++L EKS   + F ++M S L
Sbjct: 257 TNPLLLNAQETANKLSHQLDEINALVNKSRQESAVLNQYKDLIEKS--RQQFALEMKSIL 314

Query: 279 RNVDFII--QNLRDEDM 323
            NVD     +NL ++++
Sbjct: 315 PNVDIHAKDKNLNEDEL 331


>AF106591-2|AAC78238.1|  263|Caenorhabditis elegans Hypothetical
           protein T01A4.2 protein.
          Length = 263

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 102 IPMMCPITLTEPNLGKRQFQLNNMVNEAYK 191
           IP++ PI LT     KR++QL   +N  YK
Sbjct: 145 IPIITPIGLTMSLDDKREYQLMTRINSPYK 174


>AF022978-3|AAG24182.2|  403|Caenorhabditis elegans Hypothetical
           protein T01G6.6 protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +3

Query: 537 MKFFVHCSQDYINSEVRDILGRLSPQHFKILCEKC 641
           ++FF+  S D++++EV D++  L+P   ++    C
Sbjct: 279 IQFFLENSDDWVHNEVVDLIVELNPSEIEMTFMTC 313


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,796,632
Number of Sequences: 27780
Number of extensions: 271102
Number of successful extensions: 732
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)