Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0839
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52320.1 68416.m05750 F-box family protein contains F-box dom...    29   3.5  
At2g25470.1 68415.m03050 leucine-rich repeat family protein cont...    28   6.1  

>At3g52320.1 68416.m05750 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 390

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -1

Query: 417 ETVHLPTTGASS*PHEQGPTTTSTSVLDSHTTYPRLGGF 301
           ++ +L    +SS  H+   + TS SV+D H+T P +GG+
Sbjct: 86  QSKYLLLQSSSSSRHDH--SDTSVSVIDQHSTIPIMGGY 122


>At2g25470.1 68415.m03050 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to disease
           resistance protein [Lycopersicon esculentum]
           gi|3894383|gb|AAC78591
          Length = 910

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 337 RLTYNISSSRRFWIMKSTFRSLDAMSILNNLSTGDFSG 224
           +L++N   S RF   ++ F SLD + + NNL TG+  G
Sbjct: 444 KLSHN-KFSGRFLPRETNFPSLDVLRMDNNLFTGNIGG 480


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,778,720
Number of Sequences: 28952
Number of extensions: 239770
Number of successful extensions: 621
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)