Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0838
         (535 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28623.1 68418.m03496 hypothetical protein                          33   0.16 
At5g60020.1 68418.m07526 laccase, putative / diphenol oxidase, p...    28   4.5  
At3g12890.1 68416.m01606 expressed protein                             28   4.5  
At3g45840.1 68416.m04961 DC1 domain-containing protein contains ...    27   7.9  
At2g32910.1 68415.m04035 expressed protein                             27   7.9  

>At5g28623.1 68418.m03496 hypothetical protein
          Length = 236

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -1

Query: 487 EILKSIYWIDSRDSFLHQACIGSFNSSNKHKTQLQPTQLFSIIQVYVYTN 338
           EILK +  +++ D F  +  +G+F S + H T  +PT  F    VY + N
Sbjct: 54  EILKKMGLLETIDEFFTKMGLGAFTSMD-HATFSEPTNYFFSTMVYTFKN 102


>At5g60020.1 68418.m07526 laccase, putative / diphenol oxidase,
           putative similar to laccase LAC2-4, Liriodendron
           tulipifera, EMBL:LTU73106 [GI:1621467]
          Length = 577

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = -2

Query: 534 YLFTQKQKNVLSLVYTKFSSRYIGSIPGTVFCIKRA*VLLIVVINTRPN 388
           Y    K +NV  L +TK      G  PG     +    +LI V+N  PN
Sbjct: 27  YTLEIKMQNVTRLCHTKSLVSVNGQFPGPKLIAREGDQVLIKVVNQVPN 75


>At3g12890.1 68416.m01606 expressed protein
          Length = 251

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query: 463 IDSRDSFLHQACIGSFNSSNKHKTQLQPTQLFSIIQVYV--YTNIYKSTVV 317
           +DS  S     C GSFN+S+  ++   P Q+F I  V V  Y N Y+   V
Sbjct: 32  VDSSLSSYLDDCYGSFNTSSNPESIFVP-QVFGISDVSVPEYNNYYQKMSV 81


>At3g45840.1 68416.m04961 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 633

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
 Frame = -1

Query: 532 FVYPKAK---KCT*SCIHEIL--KSIYWIDSRDSFLHQACI 425
           FV+PK      C   C H ++  K  Y + SRD + H  CI
Sbjct: 129 FVFPKISGIYNCCGVCGHSVVAGKYYYSLPSRDQYAHLECI 169


>At2g32910.1 68415.m04035 expressed protein 
          Length = 691

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -1

Query: 451 DSFLHQACIGSFNSSNKHKTQLQPTQLFSIIQVY 350
           +S   +A I ++N+ NK KT+L   Q+F + +++
Sbjct: 409 ESQFKKAIIENYNNKNKFKTELTHKQVFKLKKLF 442


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,603,739
Number of Sequences: 28952
Number of extensions: 205421
Number of successful extensions: 388
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)