BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= P5PG0837 (620 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c... 27 1.7 SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 27 2.9 SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 25 6.7 SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 25 8.8 >SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 329 Score = 27.5 bits (58), Expect = 1.7 Identities = 7/31 (22%), Positives = 18/31 (58%) Frame = -3 Query: 396 LTLLHNILTFLYCIVILIVLYCNGVFTNSIL 304 + L+H + T C+++++ YC + S++ Sbjct: 1 MNLIHKVSTICQCVLVILAKYCMQIIALSLM 31 >SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr 2|||Manual Length = 2386 Score = 26.6 bits (56), Expect = 2.9 Identities = 11/26 (42%), Positives = 22/26 (84%) Frame = -1 Query: 581 LYSNWKIHVFLLHYVNINDI*QLNNI 504 L+SN ++++FLLHY+++++ L+NI Sbjct: 407 LFSNSELNLFLLHYLSLDN--DLSNI 430 >SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharomyces pombe|chr 1|||Manual Length = 147 Score = 25.4 bits (53), Expect = 6.7 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +2 Query: 188 EVRHVKKENEP*TSKLQVKRYNSLI 262 E RH+KK+N P S + KR L+ Sbjct: 44 EYRHIKKQNVPSNSVYEEKRMLGLV 68 >SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 413 Score = 25.0 bits (52), Expect = 8.8 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = -3 Query: 111 EVIYLNIEYSPRREQTQYAACFFFFFLIRSM 19 EV+ ++ Y R E T AA F F ++ SM Sbjct: 373 EVVEVSPPYDDRAESTSLAASDFIFEILSSM 403 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,315,227 Number of Sequences: 5004 Number of extensions: 44240 Number of successful extensions: 100 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 94 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 100 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 273658928 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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