Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0837
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    27   1.7  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   2.9  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    25   6.7  
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma...    25   8.8  

>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 7/31 (22%), Positives = 18/31 (58%)
 Frame = -3

Query: 396 LTLLHNILTFLYCIVILIVLYCNGVFTNSIL 304
           + L+H + T   C+++++  YC  +   S++
Sbjct: 1   MNLIHKVSTICQCVLVILAKYCMQIIALSLM 31


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/26 (42%), Positives = 22/26 (84%)
 Frame = -1

Query: 581 LYSNWKIHVFLLHYVNINDI*QLNNI 504
           L+SN ++++FLLHY+++++   L+NI
Sbjct: 407 LFSNSELNLFLLHYLSLDN--DLSNI 430


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 188 EVRHVKKENEP*TSKLQVKRYNSLI 262
           E RH+KK+N P  S  + KR   L+
Sbjct: 44  EYRHIKKQNVPSNSVYEEKRMLGLV 68


>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 111 EVIYLNIEYSPRREQTQYAACFFFFFLIRSM 19
           EV+ ++  Y  R E T  AA  F F ++ SM
Sbjct: 373 EVVEVSPPYDDRAESTSLAASDFIFEILSSM 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,227
Number of Sequences: 5004
Number of extensions: 44240
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)