Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0837
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0035 - 11765108-11765376,11765909-11766005,11766505-117665...    29   3.0  
04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236...    28   5.2  
07_03_0235 - 15564620-15564748,15565037-15565083,15565305-155653...    27   9.1  

>09_03_0035 -
           11765108-11765376,11765909-11766005,11766505-11766579,
           11767367-11767650,11768466-11768562
          Length = 273

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -3

Query: 147 LKIRILRSTKTNEVIYLNIEYSPRREQTQY--AACFFFFFLIRSMY 16
           + + +++S +  + +   + +   R++  Y  + CFFFFFL RS +
Sbjct: 203 ISLHLVQSPEKRDPLQAAVLHGQERQEQLYQKSLCFFFFFLCRSRW 248


>04_03_0983 +
           21423086-21423280,21423330-21423404,21423531-21423632,
           21423721-21423774,21423880-21423972,21424526-21424618,
           21427329-21427433,21427517-21427615,21427701-21427997,
           21428512-21428622
          Length = 407

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = -3

Query: 138 RILRSTKTNEVIYLNIEYSPRREQTQYAACFFFFFL---IRSMY 16
           R++R+ +T E++ +  +Y PR  +      FFFFFL   +RS++
Sbjct: 19  RLMRNKETKELVAM--KYIPRGLKASLLRFFFFFFLSLFVRSVF 60


>07_03_0235 -
           15564620-15564748,15565037-15565083,15565305-15565374,
           15566228-15566303,15567063-15567132,15567541-15567637,
           15568257-15568319
          Length = 183

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +1

Query: 502 SILFNCYISLIFT*CNKNT*IFQFE----YRFNCFIF 600
           +IL+ CYI  I    +K   IF+FE     R NC IF
Sbjct: 24  TILYQCYIKFILYMHSKELIIFRFEGDKAERQNCMIF 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,342,409
Number of Sequences: 37544
Number of extensions: 201365
Number of successful extensions: 301
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)