Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0837
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80024-9|AAK18886.1|  300|Caenorhabditis elegans Serpentine rece...    29   2.0  
U42844-7|AAB53819.1|  331|Caenorhabditis elegans Skn-1 dependent...    28   4.7  

>U80024-9|AAK18886.1|  300|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 10 protein.
          Length = 300

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 390 LLHNILTFLYCIVILIVLYCNGVFTNSILILEYCVIKLHN 271
           L HN       I+ILI+  C+G+F   +++ + C + L N
Sbjct: 127 LFHNYRHRFPSIIILILAVCSGIF-EDLVLFQSCTLNLSN 165


>U42844-7|AAB53819.1|  331|Caenorhabditis elegans Skn-1 dependent
           zygotic transcriptprotein 2 protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +2

Query: 281 FITQYSKIRMELVKTPLQ*RTIKITIQYKNVRI 379
           +   +S+IR E  K+P+  ++I  +I+Y+NV +
Sbjct: 229 YTDSFSQIRHETSKSPMNAQSINASIEYENVPV 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,597,029
Number of Sequences: 27780
Number of extensions: 243629
Number of successful extensions: 559
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)