Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0837
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   1.8  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    21   9.7  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    21   9.7  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    21   9.7  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    21   9.7  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    21   9.7  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    21   9.7  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    21   9.7  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    21   9.7  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    21   9.7  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    21   9.7  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    21   9.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.7  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 378 ILTFLYCIVILIVLY 334
           I TF YCI +++++Y
Sbjct: 215 IFTFSYCIPMILIIY 229



 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 562 FMYSYCIT*ILMIY 521
           F +SYCI  IL+IY
Sbjct: 216 FTFSYCIPMILIIY 229


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 584 NLYSNWKIHVFLLHYVNINDI*QL 513
           N Y+N+  H +   Y NIN I Q+
Sbjct: 96  NNYNNYNKHNYNKLYYNINYIEQI 119


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 584 NLYSNWKIHVFLLHYVNINDI*QL 513
           N Y+N+  H +   Y NIN I Q+
Sbjct: 96  NNYNNYNKHNYNKLYYNINYIEQI 119


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 584 NLYSNWKIHVFLLHYVNINDI*QL 513
           N Y+N+  H +   Y NIN I Q+
Sbjct: 96  NNYNNYNKHNYNKLYYNINYIEQI 119


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 584 NLYSNWKIHVFLLHYVNINDI*QL 513
           N Y+N+  H +   Y NIN I Q+
Sbjct: 96  NNYNNYNKHNYNKLYYNINYIEQI 119


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 584 NLYSNWKIHVFLLHYVNINDI*QL 513
           N Y+N+  H +   Y NIN I Q+
Sbjct: 96  NNYNNYNKHNYNKLYYNINYIEQI 119


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 584 NLYSNWKIHVFLLHYVNINDI*QL 513
           N Y+N+  H +   Y NIN I Q+
Sbjct: 96  NNYNNYNKHNYNKLYYNINYIEQI 119


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 584 NLYSNWKIHVFLLHYVNINDI*QL 513
           N Y+N+  H +   Y NIN I Q+
Sbjct: 96  NNYNNYNKHNYNKLYYNINYIEQI 119


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 584 NLYSNWKIHVFLLHYVNINDI*QL 513
           N Y+N+  H +   Y NIN I Q+
Sbjct: 96  NNYNNYNKHNYNKLYYNINYIEQI 119


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 584 NLYSNWKIHVFLLHYVNINDI*QL 513
           N Y+N+  H +   Y NIN I Q+
Sbjct: 96  NNYNNYNKHNYNKLYYNINYIEQI 119


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 584 NLYSNWKIHVFLLHYVNINDI*QL 513
           N Y+N+  H +   Y NIN I Q+
Sbjct: 329 NNYNNYNKHNYNKLYYNINYIEQI 352


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 584 NLYSNWKIHVFLLHYVNINDI*QL 513
           N Y+N+  H +   Y NIN I Q+
Sbjct: 329 NNYNNYNKHNYNKLYYNINYIEQI 352


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -3

Query: 282  KLHNGKLISELYLFTCNFEVYGSFSFFTCRTSIKNYLN 169
            KLH   ++++++      EV  + +  T  T ++ Y N
Sbjct: 1148 KLHYEPILADMWRSVDEMEVRKTSALTTVLTGLRKYTN 1185


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -3

Query: 282  KLHNGKLISELYLFTCNFEVYGSFSFFTCRTSIKNYLN 169
            KLH   ++++++      EV  + +  T  T ++ Y N
Sbjct: 1144 KLHYEPILADMWRSVDEMEVRKTSALTTVLTGLRKYTN 1181


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,476
Number of Sequences: 438
Number of extensions: 3173
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)