Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0835
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    26   3.8  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    26   3.8  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    25   8.7  

>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 464  FRTYISRWVPHLHF-RCLWAPVTA*DQVGCELVHTSKQKKSLESSHLT 604
            F T+I  W PH H  + +   +   D     +  + KQ K  +SS +T
Sbjct: 1180 FDTFIKDWKPHFHVNQLVKGSIVGIDNDSKRIEMSLKQSKIKDSSEIT 1227


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 450 LQRLLRPSNRNALLLHGRTRQGGGTYPRGL 361
           L +++  S  + + +HGRTRQ   ++P  L
Sbjct: 162 LMQVIEKSGADIITVHGRTRQDRSSFPVNL 191


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 378 YHHPA*FCREAVMRFGLKGGAAVVTILEILERISQDG 488
           +  P+ F  E V+   L GG AVV +   LE I Q G
Sbjct: 87  FKKPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,791
Number of Sequences: 5004
Number of extensions: 33594
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)