Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0835
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1749 - 39636951-39638102                                         29   3.9  
01_01_0715 - 5542648-5543219,5543352-5543544                           28   5.1  

>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 460 SSIVTTAAPPFKPKRITA 407
           SS+ + AAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


>01_01_0715 - 5542648-5543219,5543352-5543544
          Length = 254

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 208 ATFIFAIKGPFYLISASTVRC 146
           +TF+F   GPF+ IS    RC
Sbjct: 99  STFVFDSSGPFFFISGDPARC 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,170,164
Number of Sequences: 37544
Number of extensions: 218233
Number of successful extensions: 387
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)