Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0835
         (614 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50652| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_38641| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_32565| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_23700| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_43731| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_17082| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_5582| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.2  
SB_4242| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.9  
SB_56967| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_50032| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_27903| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_19315| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_17610| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_12282| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_58927| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_50652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = -3

Query: 39 IVLVPNSCSPGDP 1
          IV+V NSCSPGDP
Sbjct: 5  IVVVSNSCSPGDP 17


>SB_38641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -3

Query: 39 IVLVPNSCSPGDP 1
          IV++ NSCSPGDP
Sbjct: 3  IVIISNSCSPGDP 15


>SB_32565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -3

Query: 42 HIVLVPNSCSPGDP 1
          H VL  NSCSPGDP
Sbjct: 34 HRVLTSNSCSPGDP 47


>SB_23700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -3

Query: 45 FHIVLVPNSCSPGDP 1
          F I  V NSCSPGDP
Sbjct: 5  FRITAVSNSCSPGDP 19


>SB_43731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -3

Query: 45 FHIVLVPNSCSPGDP 1
          F  +LV NSCSPGDP
Sbjct: 1  FMCMLVSNSCSPGDP 15


>SB_17082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 45 FHIVLVPNSCSPGDP 1
          F + L+ NSCSPGDP
Sbjct: 17 FPLFLISNSCSPGDP 31


>SB_5582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 42 HIVLVPNSCSPGDP 1
          H +++ NSCSPGDP
Sbjct: 22 HNIVISNSCSPGDP 35


>SB_4242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -2

Query: 43 SYCPRAEFLQPGGS 2
          S CP  EFLQPGGS
Sbjct: 9  SMCPPIEFLQPGGS 22


>SB_56967| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -3

Query: 36 VLVPNSCSPGDP 1
          +LV NSCSPGDP
Sbjct: 8  ILVSNSCSPGDP 19


>SB_50032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 45 FHIVLVPNSCSPGDP 1
          + + L+ NSCSPGDP
Sbjct: 29 YRVSLISNSCSPGDP 43


>SB_27903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 42 HIVLVPNSCSPGDP 1
          H+ L  NSCSPGDP
Sbjct: 3  HVSLSSNSCSPGDP 16


>SB_19315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 45 FHIVLVPNSCSPGDP 1
          + I+L  NSCSPGDP
Sbjct: 7  YFIMLASNSCSPGDP 21


>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6500

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 453  ILEILERISQDGFRIYILDVYGLR*PLKIRWAVSSSTHQSKKKV 584
            I + +++  Q+    Y++ V+G R  +K+R+  S S  Q KKK+
Sbjct: 5069 IKQSVQQYGQERIHFYVI-VFGSRAEVKLRFDASLSDDQVKKKI 5111


>SB_17610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 471 VLKFQV*LQRLLRPSNRNALLLHGRTRQGGGTYPRGLTRCPTTSN 337
           V K+Q+ +Q   RP     L L+ ++ Q       GL  CPTT++
Sbjct: 24  VQKYQLAVQEAKRPYTDYTLKLYNQSDQNNPWSRCGLLSCPTTTS 68


>SB_12282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 42 HIVLVPNSCSPGDP 1
          H +L  NSCSPGDP
Sbjct: 19 HFLLPSNSCSPGDP 32


>SB_58927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -3

Query: 39 IVLVPNSCSPGDP 1
          I L+ NSCSPGDP
Sbjct: 6  IYLISNSCSPGDP 18


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,014,899
Number of Sequences: 59808
Number of extensions: 245622
Number of successful extensions: 1846
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1846
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)