Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0834
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    27   1.7  
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    26   2.2  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   6.8  
SPCC1840.11 |csl4|SPCC965.01|exosome subunit Csl4|Schizosaccharo...    25   6.8  

>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 80  YLFTENMKF*SLVPNSCSPGDPL 12
           Y FTE ++  SLV N  +PGD L
Sbjct: 379 YKFTERIQLDSLVYNELAPGDQL 401


>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 405 LSSWGGIFDKICSATSVKLP*QVAYLARTTVPLATILNNIGIVN 274
           L++ G +FD+IC+  S       A L RTT      L++ GIV+
Sbjct: 110 LATGGELFDRICAKGSF-YEADAAALMRTTTSAVKYLHDNGIVH 152


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +1

Query: 43  TRD*NFIFSVNRYTINIPNSFQENQFIPNI 132
           TRD N   S   Y  NIPN FQ   +   I
Sbjct: 496 TRDANMRTSKAPYIQNIPNQFQRRAYSATI 525


>SPCC1840.11 |csl4|SPCC965.01|exosome subunit
           Csl4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 181

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 309 LATILNNIGIVNNRVNDTKNTMLPNHYLHTHT 214
           L T  N++G++  + ++T   M P  Y H  T
Sbjct: 133 LTTARNDLGVIFAQSSETGEQMFPVDYQHMQT 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,873,979
Number of Sequences: 5004
Number of extensions: 37647
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)