Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0834
(441 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0303 - 3337454-3337544,3338358-3338521,3338624-3338805,333... 55 3e-08
07_01_0680 + 5128023-5128212,5128629-5128667,5129496-5129637,512... 54 5e-08
03_06_0347 + 33293915-33294104,33295143-33295284,33295365-332954... 54 7e-08
12_02_1272 + 27475302-27475491,27476792-27476876,27477076-274771... 53 1e-07
06_01_0521 - 3773749-3773931,3774295-3774485,3775115-3775334 49 2e-06
03_01_0459 + 3533718-3533916,3535009-3535150,3535290-3535410,353... 47 8e-06
07_01_0987 + 8320205-8320472,8321549-8321690,8321773-8321893,832... 39 0.002
04_04_0232 + 23794109-23794399,23795290-23796621 29 1.7
11_05_0010 - 18356835-18357080,18357475-18357672,18357780-183580... 28 2.9
10_08_1005 - 22179407-22180122,22180210-22180653,22180737-221808... 28 2.9
06_01_0867 - 6600847-6601413,6601954-6602181 28 2.9
02_05_0803 - 31842722-31843648 27 8.8
>10_01_0303 -
3337454-3337544,3338358-3338521,3338624-3338805,
3339088-3339322
Length = 223
Score = 54.8 bits (126), Expect = 3e-08
Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Frame = +2
Query: 281 MPILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPH-DDKLTYSHGNYLFH 439
M I++++VARGTVVLA+++ GN VA +IL K+PP + +L ++ Y+FH
Sbjct: 1 MAIVYAVVARGTVVLAEFSAVSGNAGAVARRILEKLPPDAESRLCFAQDRYIFH 54
>07_01_0680 +
5128023-5128212,5128629-5128667,5129496-5129637,
5129727-5129847,5129951-5130013,5130114-5130203,
5130572-5130619,5131114-5131260
Length = 279
Score = 54.0 bits (124), Expect = 5e-08
Identities = 23/51 (45%), Positives = 35/51 (68%)
Frame = +2
Query: 287 ILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFH 439
++++ VARGTVVLA+Y GNFT +A Q L K+P ++K TY+ + F+
Sbjct: 6 LIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPASNNKFTYNCDGHTFN 56
>03_06_0347 +
33293915-33294104,33295143-33295284,33295365-33295485,
33295590-33295652,33296524-33296553,33297411-33297905
Length = 346
Score = 53.6 bits (123), Expect = 7e-08
Identities = 22/51 (43%), Positives = 35/51 (68%)
Frame = +2
Query: 287 ILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFH 439
++++ VARGTV+LA+Y GNFT +A Q L K+P ++K TY+ + F+
Sbjct: 6 LIYAFVARGTVILAEYTEFTGNFTTIASQCLMKLPASNNKFTYNCDGHTFN 56
>12_02_1272 +
27475302-27475491,27476792-27476876,27477076-27477196,
27477443-27477586
Length = 179
Score = 52.8 bits (121), Expect = 1e-07
Identities = 22/51 (43%), Positives = 37/51 (72%)
Frame = +2
Query: 287 ILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFH 439
+++++VARGTVVLA++ GNF ++A Q L K+P D++LTY+ + F+
Sbjct: 6 LIYAMVARGTVVLAEHTAYAGNFRDIAAQCLQKLPAGDNRLTYTCDAHTFN 56
>06_01_0521 - 3773749-3773931,3774295-3774485,3775115-3775334
Length = 197
Score = 48.8 bits (111), Expect = 2e-06
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Frame = +2
Query: 281 MPILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIP--PHDDKLTYSHGNYLFH 439
M IL+++VARGTVVLA+++ N VA Q+L ++P D ++Y+ Y+FH
Sbjct: 1 MAILYAVVARGTVVLAEHSAAATNAGAVARQVLERLPGGGADSHVSYTQDRYVFH 55
>03_01_0459 +
3533718-3533916,3535009-3535150,3535290-3535410,
3535513-3535575,3535677-3535823
Length = 223
Score = 46.8 bits (106), Expect = 8e-06
Identities = 21/51 (41%), Positives = 33/51 (64%)
Frame = +2
Query: 287 ILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFH 439
+++S VARG VVLA +A GNF VA Q L K+P +++ +Y+ + F+
Sbjct: 9 LVYSFVARGAVVLADHAEVSGNFASVAAQCLQKLPSTNNRHSYNCDGHTFN 59
>07_01_0987 +
8320205-8320472,8321549-8321690,8321773-8321893,
8322190-8322264,8322784-8322846,8322934-8323086
Length = 273
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +2
Query: 287 ILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIP 391
++++ VARGT VLA+Y GNF +A Q L ++P
Sbjct: 23 LIYAFVARGTAVLAEYTEFTGNFPALAAQCLQRLP 57
>04_04_0232 + 23794109-23794399,23795290-23796621
Length = 540
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 204 T*RRCACVNSDLVT-LCSLCRLRDYSQCLYYSVSWLEAL 317
T RR A +++ LV+ + LC LR Y+ C SW AL
Sbjct: 105 THRRWADLHAGLVSRVADLCALRGYASCRAVCASWRAAL 143
>11_05_0010 - 18356835-18357080,18357475-18357672,18357780-18358046,
18358870-18359067,18359151-18359417,18359524-18359724,
18359807-18361363,18361499-18361859,18362602-18363467
Length = 1386
Score = 28.3 bits (60), Expect = 2.9
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +2
Query: 236 FGNIVFFVSFTRLFTMPILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTY 415
FG + ++ P L +I +G VVLAK C G E + + +PPH +
Sbjct: 1058 FGRAGWCFDAIGIYVNPDLQTIKDKGKVVLAKIGPCGGKGGEACDIM---VPPHHLESVT 1114
Query: 416 SHGNYLFH 439
N + H
Sbjct: 1115 ICSNIVIH 1122
>10_08_1005 - 22179407-22180122,22180210-22180653,22180737-22180861,
22180939-22181169,22181250-22181805,22181896-22182312,
22182405-22183216,22183653-22183738,22184464-22184534,
22184553-22185573,22186018-22186062,22186252-22186326,
22186797-22186871
Length = 1557
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 275 FTMPILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIP-PHDDKLTYSHGNYL 433
F +P SI R KY+TC ++ + LSKIP P D + Y+
Sbjct: 1395 FVLPDSSSIYKRQKTSEGKYSTCSFGDGQLTSKCLSKIPLPADQHTSLDDVQYI 1448
>06_01_0867 - 6600847-6601413,6601954-6602181
Length = 264
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 276 NNRVNDTKNTMLPNHYLHTHTFFR*WNKILDKYL-FKLEN 160
N+ +D + + N Y + FF W+KIL Y+ + LEN
Sbjct: 203 NSAYHDIHHQLYGNKYNFSQPFFVMWDKILGTYMPYTLEN 242
>02_05_0803 - 31842722-31843648
Length = 308
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 386 IPPHDDKLTYSHGNYL 433
IPP D+LTY HG+ L
Sbjct: 30 IPPASDQLTYHHGSVL 45
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,395,515
Number of Sequences: 37544
Number of extensions: 205025
Number of successful extensions: 353
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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