Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0832
(549 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 32 0.064
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 28 0.79
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.4
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 26 4.2
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 25 5.6
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 5.6
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 25 7.3
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 25 7.3
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 7.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 9.7
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo... 25 9.7
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c... 25 9.7
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 31.9 bits (69), Expect = 0.064
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Frame = +1
Query: 232 AVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNVMVEALHKDLRRSKMEAILLEVDY 411
AVQK + R P+ RQ +NL + ++N + + + KDL + ++ + + V
Sbjct: 9 AVQKRKKQKQRSVVDPVTRERQLKRNLADLEKDNFSDIRFEIPKDLLQRRV--LPISVRR 66
Query: 412 LINDLRNTLHYLDEW---------TKPEH-PPKGFVNI 495
+++ + ++YLDE KP + PP+ F N+
Sbjct: 67 ILSSRKTFVNYLDETPNSRYNTCVAKPSYKPPRKFCNV 104
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 28.3 bits (60), Expect = 0.79
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 307 NLLRMYEENQNVMVEALHKDLRRSKMEAILLEVDYLINDLRNTL 438
+LL++Y + +E + KDL RS E + + IN LRN L
Sbjct: 249 HLLKVYSGQTSFSLEEIEKDLGRSLPEYPAYQNEEGINALRNVL 292
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 199 TSKQKTMSAAEAVQKARDTFNRGTTRPIEWRRQQLKNL 312
TSK T SAA+ K + + T++PI +++ L
Sbjct: 202 TSKPATTSAAQPSSKVEENMAKATSQPITTAEKEIPEL 239
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 185 TGILQHPNKRRCQLLRPSKKLETLSIAAQPGR*NGAVSSSRI 310
+G+LQ +KR P K ++ S QP R +GA S++ +
Sbjct: 138 SGLLQSKDKRSQSPHSPKKPVKNSSSRDQPVRNSGATSTASL 179
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 5.6
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 301 LKNLLRMYEENQNVMVEALHKDLRRSK-MEAILLEVDYLIND 423
LKNLL + +++ EAL+K L +K + +L E + LIN+
Sbjct: 255 LKNLLEVKDKDVEGRNEALNKILHPAKNLVELLTEKENLINE 296
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 5.6
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 237 PKSSRHFQSRHNQADRMAP--SAAQEFVKNVRGKPKRHGGGPTQ 362
PKSS HF RH DR S ++ + +N K K+ GP Q
Sbjct: 492 PKSSHHFDERHG-GDRHEKNLSNSRRYSRNKFHK-KKQSSGPFQ 533
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 407 STSSRMASILLRLRSLCRASTMTFWFSSYIL 315
STSS M + L SL + +FW SSY L
Sbjct: 762 STSSMMKTWLCAKFSLKETNKTSFWHSSYNL 792
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 376 SKMEAILLEVDYLINDLRNTLHYLDEWTK 462
SKM I ++VDY+ DL YL ++ K
Sbjct: 243 SKMRRISIDVDYVDEDLNLINAYLSQFGK 271
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 349 EALHKDLRRSKMEAILLEVDYLIND 423
+ALH +R S + +L +Y+I D
Sbjct: 505 KALHPQVRHSNFQVLLTTYEYIIKD 529
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 436 LHYLDEWTKPEHPPKGFVNILDEVVI 513
LH+ D+ T+ HP + + +D+V I
Sbjct: 1095 LHFKDQATETSHPIRLYTRYIDKVYI 1120
>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 443
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 69 VHVTIWYVRFGRRCLVPN 16
V+ I Y FGRRCL+P+
Sbjct: 256 VNPKIMYHLFGRRCLLPS 273
>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 358 HKDLRRSKMEAILLEVDYLINDLRNTLHYLDEWTKPE 468
H D ME I LE +LIND+ + ++E + E
Sbjct: 56 HDDGNWQPMEVISLEPTHLINDIDDDNEIIEEKKETE 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.132 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,158,842
Number of Sequences: 5004
Number of extensions: 40850
Number of successful extensions: 110
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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