Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0830
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    27   2.1  
SPCC1795.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   2.7  
SPBC1711.14 |rec15||meiotic recombination protein Rec15|Schizosa...    26   3.6  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    25   6.3  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    25   6.3  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.3  

>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 199 TSIVYEGNGNLENSSEVIQIPTIRLE 276
           TSI  EGNG  +   + I +P+I LE
Sbjct: 798 TSINVEGNGEDDEEEDNISLPSINLE 823


>SPCC1795.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 112

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 389 KFRDYEYSVGLRTAFNNREPRNRVFSITHV 300
           +F D++ S      F NR+PR R+  I H+
Sbjct: 44  EFPDFDDSDSDELQFENRDPRKRIDPIKHM 73


>SPBC1711.14 |rec15||meiotic recombination protein
           Rec15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 77  LKKRYTCTRQTGLVQTHTKFPRA 9
           LKKRY  T+QT  VQ  T  PR+
Sbjct: 140 LKKRYMTTKQTRTVQNQT-MPRS 161


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 119 IYLLFILNATNF*VILVFIDFFAPLL 196
           I +L +L+ T+   I  FID F PL+
Sbjct: 126 IVILAVLHVTHVFPITTFIDMFGPLM 151


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 379 SLNFRVFGFNRQLFVKSTSIWKWNKAN 459
           SL  RVF  + +LF     +WKW+K +
Sbjct: 58  SLGLRVF--SAKLFAHCPLLWKWSKVH 82


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 184 KEINKNQYNLKIRSIQNEKQ 125
           + +N   YN K R+I+NEK+
Sbjct: 13  RHLNLEAYNAKSRAIENEKR 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,195,835
Number of Sequences: 5004
Number of extensions: 45763
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)