Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0830
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106573-7|AAC78158.1|  838|Caenorhabditis elegans Hypothetical ...    28   4.3  
Z70684-8|CAA94603.2|  360|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z77656-1|CAB01141.2|  350|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U40942-9|AAC47074.6|  703|Caenorhabditis elegans Synaptogenesis ...    27   9.9  
AL132895-2|CAC14404.1|  613|Caenorhabditis elegans Hypothetical ...    27   9.9  

>AF106573-7|AAC78158.1|  838|Caenorhabditis elegans Hypothetical
           protein F52D2.6 protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 111 YRWFEIYIQTEPEEEVHMYPANRTRTDTHEVSSCPPP 1
           +RW  ++  T     +H  PAN T   + +  S  PP
Sbjct: 626 WRWLSLFKTTSDPAPLHRTPANPTEDCSQDPDSTSPP 662


>Z70684-8|CAA94603.2|  360|Caenorhabditis elegans Hypothetical
           protein F28D1.8 protein.
          Length = 360

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = -3

Query: 219 TFVNYRCKSKGAKKSIKTNIT*KFVAFKMKSK*ISPYRWFEIYIQTEPEEEVHMYP 52
           T V ++C     KK  K +   +FV + +  K I+P  WF+  +    +  + ++P
Sbjct: 20  TMVTFKCDEMNRKKKRKKHEEIEFVEWFVNGKRINP-SWFDWRVSVSIDGHLGIWP 74


>Z77656-1|CAB01141.2|  350|Caenorhabditis elegans Hypothetical
           protein F07B10.2 protein.
          Length = 350

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 12  TRKLRVCLYESCLPGTCVPLLQ--VPSGCRFQTTYKD 116
           TR L++ L+ + +  TC+P+L   +P G  F   Y D
Sbjct: 241 TRSLQLQLFRALVAQTCLPMLMMYMPIGFMFSCPYFD 277


>U40942-9|AAC47074.6|  703|Caenorhabditis elegans Synaptogenesis
           abnormal protein 1 protein.
          Length = 703

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 211 YEGNGNLENSSEVIQIPTIRLE*VNTYEPCTCVIEKTRFRGSLLLN 348
           Y+GN  L  + + +   T+++E  N    C    E    RGS+ LN
Sbjct: 307 YKGNQKLRETGDTLTFETLKMEDHNRDIFCEATNEIGTTRGSIKLN 352


>AL132895-2|CAC14404.1|  613|Caenorhabditis elegans Hypothetical
           protein Y59A8A.2 protein.
          Length = 613

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -1

Query: 422 TNSCLLKPKTRKFRDYEYSVGLRTAFNNR 336
           TN   LKP  RKF D+E S   R   N R
Sbjct: 283 TNRDNLKPYQRKFDDWEKSEARRITVNRR 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,235,503
Number of Sequences: 27780
Number of extensions: 260840
Number of successful extensions: 560
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)