Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0830
         (494 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10160.1 68416.m01218 dihydrofolate synthetase/folylpolygluta...    28   4.0  
At5g50400.1 68418.m06242 calcineurin-like phosphoesterase family...    27   6.9  
At5g25510.1 68418.m03035 serine/threonine protein phosphatase 2A...    27   6.9  

>At3g10160.1 68416.m01218 dihydrofolate
           synthetase/folylpolyglutamate synthetase (DHFS/FPGS3)
           nearly identical to gi:17976757
          Length = 464

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 145 YEFLSYIGFY*FLCTFTFTSIVYEGNGNLENSSEVIQIPTI 267
           ++FL+ + F  F+C     +++  G G   +S+ VIQ P +
Sbjct: 51  FQFLTVLAFKIFVCEKVDVAVIEVGLGGKLDSTNVIQKPVV 91


>At5g50400.1 68418.m06242 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 611

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 407 LKPKTRKFRDYEYSVGLRTAFNN 339
           LKPK   FRDY+Y     TAF++
Sbjct: 546 LKPKWSIFRDYDYGFVKLTAFDH 568


>At5g25510.1 68418.m03035 serine/threonine protein phosphatase 2A
           (PP2A) regulatory subunit B', putative similar to
           SWISS-PROT:Q28653 serine/threonine protein phosphatase
           2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
           subunit, B' delta isoform, PP2A, B subunit, B56 delta
           isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
           subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
           [Oryctolagus cuniculus]; contains Pfam domain, PF01603:
           Protein phosphatase 2A regulatory B subunit (B56 family)
          Length = 500

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 422 TNSCLLKPKTRKFRDYEYSVGLRTAFNNREPRNRVFSITHVH 297
           T+ CL     +K+ D+ + V L   F++ +PR R    T +H
Sbjct: 187 TSPCLDAKVAKKYLDHAFIVRLLDLFDSEDPRERECLKTILH 228


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,190,332
Number of Sequences: 28952
Number of extensions: 226762
Number of successful extensions: 346
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)