Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0829
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...   102   4e-23
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom...    31   0.11 
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    27   2.3  
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        27   3.0  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    27   3.0  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    26   4.0  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    25   7.0  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    25   7.0  
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    25   9.2  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    25   9.2  
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    25   9.2  

>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score =  102 bits (245), Expect = 4e-23
 Identities = 45/85 (52%), Positives = 62/85 (72%)
 Frame = +3

Query: 384 LKTNWFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKD 563
           +K  WF E  +MWPG   + +VK+VL+  KSKYQ++ VF++ + G VLVLDG IQ T++D
Sbjct: 11  IKDGWFREINNMWPGQAMTLKVKKVLYAGKSKYQDVLVFESETYGHVLVLDGAIQATERD 70

Query: 564 EFSYQEMISFLPLCCHKNPENVLIV 638
           EFSYQEMI+ L L  H NP+ VL++
Sbjct: 71  EFSYQEMIAHLALNSHPNPKKVLVI 95


>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +3

Query: 6   CRNRHEDICVQCQLSTVKFYI*FLSVRDKGINHKKYIYLPIGRYLGSRFVICIESYLWTY 185
           CRN   D+C++CQ +T        +V     NH  + +  I R+L +R V  +++  W +
Sbjct: 44  CRNHIMDLCIECQANTDSAAAQECTVAWGTCNHAFHFHC-ISRWLNTRNVCPLDNREWEF 102


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 457 YCTQKNQNTRISKFLIQPVWGRFLSWTESYN 549
           +CTQK   + +SKF   P   R +  TE+ N
Sbjct: 20  FCTQKLHRSTVSKFFEHPTSKRSIGVTENGN 50


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +3

Query: 417 MWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKD 563
           +W G  +   +K +L   K K  N+  FD   L  V+    +++ +  D
Sbjct: 55  LWDGHVWIGSLKNILIYLKQKGYNLDNFDAKQLANVMAFTSLLEGSVND 103


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 562 SF*VHCMI-PSKTRTFPKLVVSKTWIFWY 479
           SF V  +I PS+T    K  V KTW +W+
Sbjct: 806 SFSVLSLICPSRTLIIDKACVEKTWPYWW 834


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +3

Query: 468 EKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLPLCCHKNPENVLIV 638
           +K+K     + D  SLG   +   +I C  K     + +I  + L CH  PE VL V
Sbjct: 190 QKTKPTQQAIRDLRSLG---ITPDLIACRCKQPLE-KSVIDKISLFCHVGPEQVLAV 242


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 546 QCTQKDEFSYQEMISFLP 599
           +C+QKD   YQE  SF P
Sbjct: 326 RCSQKDAQIYQEWYSFFP 343


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 546 QCTQKDEFSYQEMISFLP 599
           +C+QKD   YQE  SF P
Sbjct: 280 RCSQKDAQIYQEWYSFFP 297


>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -1

Query: 612 CGSIKAKMISFPDKKTHLSECI 547
           CGS K K  SFP K TH   C+
Sbjct: 257 CGSAKKKFHSFP-KCTHNDTCL 277


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -3

Query: 523 TFPKLVVSKTWIFWYFDFSVCSTSLTSNEKVPPGHISHDSVNQ 395
           T  KLV ++    W      C  S  +N  + PG +    VNQ
Sbjct: 310 TLAKLVATQCHRLWLVQSPSCPPSPKNNAHLSPGSMGGVKVNQ 352


>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 268 IPCSKYKNSFRPSYELNITELTFHNHDIYVQRYDSI 161
           +P + Y   + P Y+LN+      NH+   Q  DSI
Sbjct: 325 LPYNDYLQYYGPDYKLNVLSNNMENHNTR-QYLDSI 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,729,756
Number of Sequences: 5004
Number of extensions: 57333
Number of successful extensions: 156
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)