Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0829
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56549| Best HMM Match : Spermine_synth (HMM E-Value=1.5e-29)        69   2e-12
SB_55793| Best HMM Match : Spermine_synth (HMM E-Value=1.6e-15)        61   9e-10
SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)             36   0.037
SB_26979| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=0.017)           36   0.037
SB_43221| Best HMM Match : PHF5 (HMM E-Value=2)                        29   4.2  
SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023)              29   4.2  
SB_21644| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_46984| Best HMM Match : Exo_endo_phos (HMM E-Value=4.2e-09)         27   9.7  
SB_46241| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   9.7  
SB_41253| Best HMM Match : Exo_endo_phos (HMM E-Value=4.5e-09)         27   9.7  
SB_32796| Best HMM Match : MSG (HMM E-Value=2.7)                       27   9.7  
SB_25693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)           27   9.7  
SB_15701| Best HMM Match : MT-A70 (HMM E-Value=1.6e-17)                27   9.7  
SB_56614| Best HMM Match : PHF5 (HMM E-Value=1.1)                      27   9.7  
SB_24634| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00054)         27   9.7  
SB_9246| Best HMM Match : RHS_repeat (HMM E-Value=5.5e-06)             27   9.7  

>SB_56549| Best HMM Match : Spermine_synth (HMM E-Value=1.5e-29)
          Length = 294

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 30/43 (69%), Positives = 35/43 (81%)
 Frame = +3

Query: 510 SLGKVLVLDGIIQCTQKDEFSYQEMISFLPLCCHKNPENVLIV 638
           S G VLVLDG+IQCT +DEFSYQEMIS LPL  H NP+ VL++
Sbjct: 157 SFGTVLVLDGVIQCTDRDEFSYQEMISMLPLNSHPNPKKVLVI 199


>SB_55793| Best HMM Match : Spermine_synth (HMM E-Value=1.6e-15)
          Length = 317

 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 28/67 (41%), Positives = 42/67 (62%)
 Frame = +3

Query: 438 SFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLPLCCHKN 617
           SFE+ EVL  +++   ++ +F     G V+ LDGIIQ T++DEF Y EM++  PL  H  
Sbjct: 194 SFEIGEVLFEQQTDSWHLIIFRNEEFGTVMALDGIIQTTERDEFIYHEMLTHTPLFAHGA 253

Query: 618 PENVLIV 638
            + VLI+
Sbjct: 254 AKRVLII 260


>SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)
          Length = 451

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 21/74 (28%), Positives = 38/74 (51%)
 Frame = +2

Query: 362 KQEKDGQTKNQLVYGIMRYVAWGYFLIRSQRSTAHRKIKIPEYPSF*YNQFGEGSCLGRN 541
           K+    QTK   V  ++R     YF+I+ +  T  R++++P+ PSF  N   + +   + 
Sbjct: 46  KKSGADQTKRH-VLALLRAAFAIYFVIQIKERTVRRELEMPDQPSFDNNNLVQNTICSQE 104

Query: 542 HTMHSER*VFLSGN 583
           HT +     +L+GN
Sbjct: 105 HTANGLS--YLNGN 116


>SB_26979| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=0.017)
          Length = 453

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
 Frame = +3

Query: 417 MWPGGTFSFEVKEVLHTEKSKYQNIQVF----DTTSLGKVLVLDGIIQCTQKDEFSYQEM 584
           +WPG   +  +K++L +EKS  Q  +VF    D T  GK +    +   T   +  YQ M
Sbjct: 132 LWPGPVSTEAIKDMLKSEKSS-QMQRVFADSEDVTFTGKAVA--WLAAATDPSQCVYQLM 188

Query: 585 ISFLPLCCHKN 617
           ++  P+C + N
Sbjct: 189 VNHRPMCVYSN 199


>SB_43221| Best HMM Match : PHF5 (HMM E-Value=2)
          Length = 361

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 315 TCLILDFNCRLGTNY*SKKKMDKLKTNWFTESC 413
           T L+L+ + + G  Y  K+K  K    WF E C
Sbjct: 207 TKLLLEISEKAGFKYGDKQKCQKTNAPWFDEEC 239


>SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023)
          Length = 836

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 315 TCLILDFNCRLGTNY*SKKKMDKLKTNWFTESC 413
           T L+L+ + + G  Y  K+K  K    WF E C
Sbjct: 478 TKLLLEISEKAGFKYGDKQKCQKTNAPWFDEEC 510


>SB_21644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +3

Query: 432 TFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLP 599
           TF  ++K      + KY N  V  TTS G V   D ++ CT        +M+ F+P
Sbjct: 170 TFKDKIKLNETVARVKYNNTGVEVTTSSGDVYSADYVV-CTFSTGVLASDMVEFVP 224


>SB_46984| Best HMM Match : Exo_endo_phos (HMM E-Value=4.2e-09)
          Length = 476

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 315 TCLILDFNCRLGTNY*SKKKMDKLKTNWFTESC 413
           T L+++ + + G  Y  K+K  K    WF E C
Sbjct: 351 TKLLVEISEKAGFKYGDKQKCQKTNAPWFDEEC 383


>SB_46241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 315 TCLILDFNCRLGTNY*SKKKMDKLKTNWFTESC 413
           T L+++ + + G  Y  K+K  K    WF E C
Sbjct: 556 TKLLVEISEKAGFKYGDKQKCQKTNAPWFDEEC 588


>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1858

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 315  TCLILDFNCRLGTNY*SKKKMDKLKTNWFTESC 413
            T L+++ + + G  Y  K+K  K    WF E C
Sbjct: 1121 TKLLVEISEKAGFKYGDKQKCQKTNAPWFDEEC 1153


>SB_41253| Best HMM Match : Exo_endo_phos (HMM E-Value=4.5e-09)
          Length = 404

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 315 TCLILDFNCRLGTNY*SKKKMDKLKTNWFTESC 413
           T L+++ + + G  Y  K+K  K    WF E C
Sbjct: 351 TKLLVEISEKAGFKYGDKQKCQKTNAPWFDEEC 383


>SB_32796| Best HMM Match : MSG (HMM E-Value=2.7)
          Length = 270

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 315 TCLILDFNCRLGTNY*SKKKMDKLKTNWFTESC 413
           T L+++ + + G  Y  K+K  K    WF E C
Sbjct: 34  TKLLVEISEKAGFKYGDKQKCQKTNAPWFDEEC 66


>SB_25693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)
          Length = 826

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 315 TCLILDFNCRLGTNY*SKKKMDKLKTNWFTESC 413
           T L+++ + + G  Y  K+K  K    WF E C
Sbjct: 696 TKLLVEISEKAGFKYGDKQKCQKTNAPWFDEEC 728


>SB_15701| Best HMM Match : MT-A70 (HMM E-Value=1.6e-17)
          Length = 1178

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 315  TCLILDFNCRLGTNY*SKKKMDKLKTNWFTESC 413
            T L+++ + + G  Y  K+K  K    WF E C
Sbjct: 1065 TKLLVEISEKAGFKYGDKQKCQKTNAPWFDEEC 1097


>SB_56614| Best HMM Match : PHF5 (HMM E-Value=1.1)
          Length = 220

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 315 TCLILDFNCRLGTNY*SKKKMDKLKTNWFTESC 413
           T L+++ + + G  Y  K+K  K    WF E C
Sbjct: 66  TKLLVEISEKAGFKYGDKQKCQKTNAPWFDEEC 98


>SB_24634| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00054)
          Length = 1012

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 315  TCLILDFNCRLGTNY*SKKKMDKLKTNWFTESC 413
            T L+++ + + G  Y  K+K  K    WF E C
Sbjct: 942  TKLLVEISEKAGFKYGDKQKCQKTNAPWFDEEC 974


>SB_9246| Best HMM Match : RHS_repeat (HMM E-Value=5.5e-06)
          Length = 530

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 315 TCLILDFNCRLGTNY*SKKKMDKLKTNWFTESC 413
           T L+++ + + G  Y  K+K  K    WF E C
Sbjct: 477 TKLLVEISEKAGFKYGDKQKCQKTNAPWFDEEC 509


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,385,307
Number of Sequences: 59808
Number of extensions: 389147
Number of successful extensions: 881
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)