Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0829
(639 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110485-13|CAB60361.2| 314|Caenorhabditis elegans Hypothetical... 101 4e-22
AJ306734-1|CAC37332.1| 314|Caenorhabditis elegans spermidine sy... 101 4e-22
Z70757-5|CAA94801.1| 110|Caenorhabditis elegans Hypothetical pr... 29 2.8
AB077287-1|BAB83695.1| 101|Caenorhabditis elegans RING-H2 finge... 29 2.8
Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical p... 29 3.7
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr... 28 4.9
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p... 28 4.9
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ... 27 8.6
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ... 27 8.6
>AL110485-13|CAB60361.2| 314|Caenorhabditis elegans Hypothetical
protein Y46G5A.19 protein.
Length = 314
Score = 101 bits (242), Expect = 4e-22
Identities = 43/73 (58%), Positives = 59/73 (80%)
Frame = +3
Query: 420 WPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLP 599
WPG FS +VK+VL EKSKYQ++ VF++T+ G VLVLDGI+Q T++DEFSYQEM++ LP
Sbjct: 43 WPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLP 102
Query: 600 LCCHKNPENVLIV 638
+ H +P+ VLI+
Sbjct: 103 MFAHPDPKRVLII 115
>AJ306734-1|CAC37332.1| 314|Caenorhabditis elegans spermidine
synthase protein.
Length = 314
Score = 101 bits (242), Expect = 4e-22
Identities = 43/73 (58%), Positives = 59/73 (80%)
Frame = +3
Query: 420 WPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLP 599
WPG FS +VK+VL EKSKYQ++ VF++T+ G VLVLDGI+Q T++DEFSYQEM++ LP
Sbjct: 43 WPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLP 102
Query: 600 LCCHKNPENVLIV 638
+ H +P+ VLI+
Sbjct: 103 MFAHPDPKRVLII 115
>Z70757-5|CAA94801.1| 110|Caenorhabditis elegans Hypothetical
protein ZK287.5 protein.
Length = 110
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +3
Query: 6 CRNRHEDICVQCQLSTVKFYI*FLSVRDKGINHKKYIYLPIGRYLGSRFVICIESYLWTY 185
CRN D+C++CQ + +V NH + + I R+L +R V +++ W +
Sbjct: 47 CRNHIMDLCIECQANQAAGLKDECTVAWGNCNHAFHFHC-ISRWLKTRQVCPLDNREWEF 105
>AB077287-1|BAB83695.1| 101|Caenorhabditis elegans RING-H2 finger
protein Rbx1 protein.
Length = 101
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +3
Query: 6 CRNRHEDICVQCQLSTVKFYI*FLSVRDKGINHKKYIYLPIGRYLGSRFVICIESYLWTY 185
CRN D+C++CQ + +V NH + + I R+L +R V +++ W +
Sbjct: 38 CRNHIMDLCIECQANQAAGLKDECTVAWGNCNHAFHFHC-ISRWLKTRQVCPLDNREWEF 96
>Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical
protein C54D10.6 protein.
Length = 348
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 354 NY*SKKKMDKLKTNWFTESCDMWPGGTFSFEVKEV 458
N ++ ++K+ NW CD+W T F V+++
Sbjct: 161 NVEDRESIEKIVDNWRNAPCDIWNENTVVFSVQKL 195
>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
F18C12.2b protein.
Length = 2271
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +3
Query: 396 WFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQ-----CTQK 560
W+ D G SFE + L+TEK+ ++ Q++ + K + L + Q C QK
Sbjct: 983 WYYHDKDAKQVGPLSFEKMKSLYTEKTIFEKSQIW-AAGMDKWMSLAAVPQFRWTVCQQK 1041
Query: 561 DE 566
D+
Sbjct: 1042 DQ 1043
>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
F18C12.2a protein.
Length = 2279
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +3
Query: 396 WFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQ-----CTQK 560
W+ D G SFE + L+TEK+ ++ Q++ + K + L + Q C QK
Sbjct: 983 WYYHDKDAKQVGPLSFEKMKSLYTEKTIFEKSQIW-AAGMDKWMSLAAVPQFRWTVCQQK 1041
Query: 561 DE 566
D+
Sbjct: 1042 DQ 1043
>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
protein RME-8 protein.
Length = 2279
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +3
Query: 396 WFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQ-----CTQK 560
W+ D G SFE + L+TEK+ ++ Q++ + K + L + Q C QK
Sbjct: 983 WYYHDKDAKQVGPLSFEKMKSLYTEKTIFEKSQIW-AAGMDKWMSLAAVPQFRWTVCQQK 1041
Query: 561 DE 566
D+
Sbjct: 1042 DQ 1043
>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
protein C36B7.5b protein.
Length = 1148
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +1
Query: 376 WTN*KPTGLRNHAICGLGVLSHSK---SKKYCTQKNQNTRISKFLIQ-PVWGRFLSWTES 543
WT P L A CG+G + ++ + + C + K L+ P W ++SWT
Sbjct: 351 WTLWSPWSLCT-ATCGVGEIQRNRVCQTGRNCDGPSVEVEACKALLPCPTWSSWMSWTGC 409
Query: 544 YNALRK 561
N+ K
Sbjct: 410 GNSCGK 415
>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
protein C36B7.5a protein.
Length = 1121
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +1
Query: 376 WTN*KPTGLRNHAICGLGVLSHSK---SKKYCTQKNQNTRISKFLIQ-PVWGRFLSWTES 543
WT P L A CG+G + ++ + + C + K L+ P W ++SWT
Sbjct: 351 WTLWSPWSLCT-ATCGVGEIQRNRVCQTGRNCDGPSVEVEACKALLPCPTWSSWMSWTGC 409
Query: 544 YNALRK 561
N+ K
Sbjct: 410 GNSCGK 415
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,920,775
Number of Sequences: 27780
Number of extensions: 312886
Number of successful extensions: 735
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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