Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0829
(639 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g70310.1 68414.m08089 spermidine synthase 2 (SPDSYN2) / putre... 100 2e-21
At1g23820.2 68414.m03004 spermidine synthase 1 (SPDSYN1) / putre... 99 3e-21
At1g23820.1 68414.m03005 spermidine synthase 1 (SPDSYN1) / putre... 99 3e-21
At5g53120.3 68418.m06603 spermidine synthase, putative / putresc... 94 8e-20
At5g53120.2 68418.m06602 spermidine synthase, putative / putresc... 94 8e-20
At5g53120.1 68418.m06601 spermidine synthase, putative / putresc... 94 8e-20
At5g19530.1 68418.m02326 spermine/spermidine synthase family pro... 66 2e-11
At2g04920.1 68415.m00513 F-box family protein (FBX9) identical t... 31 0.65
At4g14580.1 68417.m02244 CBL-interacting protein kinase 4 (CIPK4... 30 1.1
At4g11800.1 68417.m01879 calcineurin-like phosphoesterase family... 29 2.6
At3g04350.1 68416.m00460 expressed protein 29 2.6
At5g20570.1 68418.m02442 ring-box protein-related similar to rin... 29 3.4
At5g11300.1 68418.m01319 cyclin, putative (CYC3b) similar to cyc... 28 4.5
At1g14460.1 68414.m01715 DNA polymerase-related weak similarity ... 28 6.0
>At1g70310.1 68414.m08089 spermidine synthase 2 (SPDSYN2) /
putrescine aminopropyltransferase 2 identical to
SP|O48661 Spermidine synthase 2 (EC 2.5.1.16)
(Putrescine aminopropyltransferase 2) (SPDSY 2)
{Arabidopsis thaliana}
Length = 340
Score = 99.5 bits (237), Expect = 2e-21
Identities = 43/88 (48%), Positives = 61/88 (69%)
Frame = +3
Query: 375 MDKLKTNWFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCT 554
M + WF+E MWPG S +V+++L KS YQ++ VF + + GKVLVLDG+IQ T
Sbjct: 44 MSSIIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQDVIVFQSATYGKVLVLDGVIQLT 103
Query: 555 QKDEFSYQEMISFLPLCCHKNPENVLIV 638
++DE +YQEMI+ LPLC NP+ VL++
Sbjct: 104 ERDECAYQEMITHLPLCSISNPKKVLVI 131
>At1g23820.2 68414.m03004 spermidine synthase 1 (SPDSYN1) /
putrescine aminopropyltransferase 1 identical to
SP|Q9ZUB3 Spermidine synthase 1 (EC 2.5.1.16)
(Putrescine aminopropyltransferase 1) (SPDSY 1)
{Arabidopsis thaliana}
Length = 283
Score = 98.7 bits (235), Expect = 3e-21
Identities = 43/81 (53%), Positives = 59/81 (72%)
Frame = +3
Query: 396 WFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSY 575
WF+E MWPG S +V++VL KS YQ++ VF + + GKVLVLDG+IQ T++DE +Y
Sbjct: 47 WFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAY 106
Query: 576 QEMISFLPLCCHKNPENVLIV 638
QEMI+ LPLC NP+ VL++
Sbjct: 107 QEMITHLPLCSIPNPKKVLVI 127
>At1g23820.1 68414.m03005 spermidine synthase 1 (SPDSYN1) /
putrescine aminopropyltransferase 1 identical to
SP|Q9ZUB3 Spermidine synthase 1 (EC 2.5.1.16)
(Putrescine aminopropyltransferase 1) (SPDSY 1)
{Arabidopsis thaliana}
Length = 334
Score = 98.7 bits (235), Expect = 3e-21
Identities = 43/81 (53%), Positives = 59/81 (72%)
Frame = +3
Query: 396 WFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSY 575
WF+E MWPG S +V++VL KS YQ++ VF + + GKVLVLDG+IQ T++DE +Y
Sbjct: 47 WFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAY 106
Query: 576 QEMISFLPLCCHKNPENVLIV 638
QEMI+ LPLC NP+ VL++
Sbjct: 107 QEMITHLPLCSIPNPKKVLVI 127
>At5g53120.3 68418.m06603 spermidine synthase, putative / putrescine
aminopropyltransferase, putative similar to SP|O82147
Spermidine synthase (EC 2.5.1.16) (Putrescine
aminopropyltransferase) (SPDSY) {Coffea arabica};
contains Pfam profile PF01564: Spermine/spermidine
synthase
Length = 359
Score = 93.9 bits (223), Expect = 8e-20
Identities = 41/74 (55%), Positives = 57/74 (77%)
Frame = +3
Query: 417 MWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFL 596
MWPG S +V++VL +KS +Q + VF++ + GKVLVLDGI+Q T+KDE +YQEMI+ L
Sbjct: 77 MWPGEAHSLKVEKVLFKDKSDFQEVLVFESATYGKVLVLDGIVQLTEKDECAYQEMIAHL 136
Query: 597 PLCCHKNPENVLIV 638
PLC +P+NVL+V
Sbjct: 137 PLCSISSPKNVLVV 150
>At5g53120.2 68418.m06602 spermidine synthase, putative / putrescine
aminopropyltransferase, putative similar to SP|O82147
Spermidine synthase (EC 2.5.1.16) (Putrescine
aminopropyltransferase) (SPDSY) {Coffea arabica};
contains Pfam profile PF01564: Spermine/spermidine
synthase
Length = 359
Score = 93.9 bits (223), Expect = 8e-20
Identities = 41/74 (55%), Positives = 57/74 (77%)
Frame = +3
Query: 417 MWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFL 596
MWPG S +V++VL +KS +Q + VF++ + GKVLVLDGI+Q T+KDE +YQEMI+ L
Sbjct: 77 MWPGEAHSLKVEKVLFKDKSDFQEVLVFESATYGKVLVLDGIVQLTEKDECAYQEMIAHL 136
Query: 597 PLCCHKNPENVLIV 638
PLC +P+NVL+V
Sbjct: 137 PLCSISSPKNVLVV 150
>At5g53120.1 68418.m06601 spermidine synthase, putative / putrescine
aminopropyltransferase, putative similar to SP|O82147
Spermidine synthase (EC 2.5.1.16) (Putrescine
aminopropyltransferase) (SPDSY) {Coffea arabica};
contains Pfam profile PF01564: Spermine/spermidine
synthase
Length = 359
Score = 93.9 bits (223), Expect = 8e-20
Identities = 41/74 (55%), Positives = 57/74 (77%)
Frame = +3
Query: 417 MWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFL 596
MWPG S +V++VL +KS +Q + VF++ + GKVLVLDGI+Q T+KDE +YQEMI+ L
Sbjct: 77 MWPGEAHSLKVEKVLFKDKSDFQEVLVFESATYGKVLVLDGIVQLTEKDECAYQEMIAHL 136
Query: 597 PLCCHKNPENVLIV 638
PLC +P+NVL+V
Sbjct: 137 PLCSISSPKNVLVV 150
>At5g19530.1 68418.m02326 spermine/spermidine synthase family
protein similar to SP|P09158 Spermidine synthase (EC
2.5.1.16) (Putrescine aminopropyltransferase)
{Escherichia coli}; contains Pfam profile PF01564:
Spermine/spermidine synthase
Length = 339
Score = 66.1 bits (154), Expect = 2e-11
Identities = 33/82 (40%), Positives = 48/82 (58%)
Frame = +3
Query: 393 NWFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFS 572
+W+ E+ D +SF + VLH S+YQ+I + DT GKVLV+DG +Q ++DEF
Sbjct: 34 HWYEETID--DDLKWSFALNSVLHQGTSEYQDIALLDTKRFGKVLVIDGKMQSAERDEFI 91
Query: 573 YQEMISFLPLCCHKNPENVLIV 638
Y E + L H NP+ V I+
Sbjct: 92 YHECLIHPALLFHPNPKTVFIM 113
>At2g04920.1 68415.m00513 F-box family protein (FBX9) identical to
F-box protein family, AtFBX9 (GI:20197985) [Arabidopsis
thaliana]; contains F-box domain PF:00646; contains
TIGRFAM TIGR01640 : F-box protein interaction domain
Length = 376
Score = 31.1 bits (67), Expect = 0.65
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +3
Query: 438 SFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKD 563
S E K VL + S Y + QV+ + KV DG++ CT KD
Sbjct: 75 SIEFKSVLSLKDSHYNSEQVY----IAKVFHCDGLLLCTTKD 112
>At4g14580.1 68417.m02244 CBL-interacting protein kinase 4 (CIPK4)
identical to CBL-interacting protein kinase 4
[Arabidopsis thaliana] gi|13249503|gb|AAG01367;
identical to cDNA calcineurin B-like (CBL) interacting
protein kinase 4 (CIPK4) GI:13249502
Length = 426
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +3
Query: 390 TNWFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEF 569
T WF +S ++ + FE+ L E I FD SL L L G+ + ++ E
Sbjct: 274 TVWFQKSLEISEFQSSVFELDRFLEKEAKSSNAITAFDLISLSSGLDLSGLFERRKRKEK 333
Query: 570 SYQEMIS 590
+ +S
Sbjct: 334 RFTARVS 340
>At4g11800.1 68417.m01879 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 1012
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = +3
Query: 396 WFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSY 575
WF D GG S+ V ++L + F + G VL++ G + F+Y
Sbjct: 369 WFDFMADTGDGGNSSYSVAKLLAQPSLRVPVANNFISLPRGNVLLIGGDLAYPNPSSFTY 428
Query: 576 QEMISFLP 599
++ + F P
Sbjct: 429 EKRL-FCP 435
>At3g04350.1 68416.m00460 expressed protein
Length = 567
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 560 FLSALYDSVQDKNLPQTGCIKNLD 489
F YD ++ +P GC+KNLD
Sbjct: 227 FFCCTYDLSSERTVPDIGCLKNLD 250
>At5g20570.1 68418.m02442 ring-box protein-related similar to
ring-box protein 1 GI:4769004 from [Homo sapiens]
Length = 118
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +3
Query: 6 CRNRHEDICVQCQLSTVKFYI*FLSVRDKGINHKKYIYLPIGRYLGSRFVICIESYLWTY 185
CRN D+C++CQ + +V NH + + I R+L +R V +++ W +
Sbjct: 55 CRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHC-ISRWLKTRQVCPLDNSEWEF 113
>At5g11300.1 68418.m01319 cyclin, putative (CYC3b) similar to cyclin
3a [Arabidopsis thaliana] GI:509425; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain; identical to cDNA cyc3b mRNA
for cyclin 3b protein GI:728520
Length = 436
Score = 28.3 bits (60), Expect = 4.5
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Frame = +2
Query: 101 PQKIYLSTN---RSLSRVSVCHMYRIISLDIYIVIVKCEFSNVEFVRRAKRVFIFRARNT 271
P +YL+ N R LS S R+ L + +++ ++ E F F NT
Sbjct: 224 PDTLYLTVNLIDRFLSN-SYIERQRLQLLGVSCMLIASKYE--ELSAPGVEEFCFITANT 280
Query: 272 LFEREIVKTET*CQNLFNFRLQLPTWY*LLKQ-EKDGQTKNQLVYGIMRYVA 424
E++ E N +FRL +PT L++ K Q ++ + + Y+A
Sbjct: 281 YTRPEVLSMEIQILNFVHFRLSVPTTKTFLRRFIKAAQASYKVPFIELEYLA 332
>At1g14460.1 68414.m01715 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1116
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 297 VFTISRSNNVFLARNIKTRFALLTNSTLLNSHFT 196
V +I+ S + L RN++ R LL+ + LLNS T
Sbjct: 925 VSSITNSIEMVLRRNVEVRIILLSETELLNSKQT 958
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,729,589
Number of Sequences: 28952
Number of extensions: 278210
Number of successful extensions: 622
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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