Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0825
         (541 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44)    176   8e-45
SB_28902| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=0.088)           57   8e-09
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)                 31   0.60 
SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)               29   1.8  
SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_7842| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_44756| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_13243| Best HMM Match : COX17 (HMM E-Value=1.7)                     28   4.2  
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              28   4.2  
SB_5363| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.2  
SB_24362| Best HMM Match : NOGCT (HMM E-Value=3.2)                     28   5.6  
SB_45400| Best HMM Match : MAM (HMM E-Value=0)                         28   5.6  
SB_43444| Best HMM Match : WSC (HMM E-Value=0.084)                     27   7.4  
SB_20155| Best HMM Match : Fe_dep_repress (HMM E-Value=2.6)            27   7.4  
SB_18286| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_48325| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_35180| Best HMM Match : DUF795 (HMM E-Value=2.1)                    27   7.4  
SB_30408| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_52254| Best HMM Match : ANF_receptor (HMM E-Value=7.84727e-44)      27   9.8  
SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_48121| Best HMM Match : Kelch_1 (HMM E-Value=0.023)                 27   9.8  

>SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44)
          Length = 210

 Score =  176 bits (429), Expect = 8e-45
 Identities = 76/148 (51%), Positives = 106/148 (71%)
 Frame = +2

Query: 59  DNIEQSLNDKSKPWTKYFELAEQKVGVNRLYIFLGLVAFTGLYLVFGFGAELICNSIGFV 238
           +N+E  L +K+  +T      E+K  V +LY+FLGLV    LYL+FG+GA+LI   +GF 
Sbjct: 13  ENLENWLEEKNY-FTDALGKVEEKTKVKKLYLFLGLVGVFSLYLIFGYGADLIVTVLGFA 71

Query: 239 YPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCY 418
           YPAY S+KA+ES QKDDDT+WL YWVV+A F+IVE+FSD ++ WFPLY+L K IF+ WC 
Sbjct: 72  YPAYQSVKAVESVQKDDDTQWLIYWVVFASFNIVEFFSDILLSWFPLYFLTKLIFLGWCM 131

Query: 419 LPTEYNGSLVIYYRIIRPYYQKHHGRID 502
            P  +NGS  +Y ++I+P+  +H  +ID
Sbjct: 132 APVSWNGSDTLYQKVIKPFVLRHQSQID 159


>SB_28902| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=0.088)
          Length = 110

 Score = 57.2 bits (132), Expect = 8e-09
 Identities = 25/57 (43%), Positives = 35/57 (61%)
 Frame = +2

Query: 143 RLYIFLGLVAFTGLYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDDDTKWLTYW 313
           R+ + L +V FT LY+  G+ A   CN I  V+P Y S+ A+E+P  +  TKWL YW
Sbjct: 55  RIQVLL-MVLFTLLYVAEGYAAACFCNVIAVVFPVYASISAIENPDYEIGTKWLMYW 110


>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
          Length = 942

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 237 TKPIELHINSAPKPNTKYKPVNATKPKKMYNLFTPTFCSA 118
           T+P+  H  S+P+P + + PVN T P       TP   +A
Sbjct: 225 TQPLSSHSGSSPQPGSAFSPVN-TPPNAQAQQMTPPSSAA 263


>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
          Length = 1724

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 122 RLVQNISSMACFCRSDFVLCCLYTLVIWMPL 30
           R ++NI +  C   S F LCC + L  W+ L
Sbjct: 100 RTLENIRARRCMRTSAFGLCCRFILAHWVKL 130


>SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 829

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 326 CFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIY 454
           C ++V       +G F +++  +C     CY+P + NGS  IY
Sbjct: 374 CVTVVHDPPFLKIGEFNIFYDKECTLEHVCYVPVQLNGSESIY 416


>SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -2

Query: 315 TQYVSHFVSSSFCGDSRAFIDMYAGYTK 232
           T +V HFV + FCG++R+ +  +  + +
Sbjct: 774 TAFVRHFVLARFCGENRSIVINFRSFNR 801


>SB_7842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 8   GHEVKDRTMASKLQEYKDNIEQSLNDKSKPWTKYFELAE-QKVGVNRLYIFLG 163
           G+ +KD+T ASK  E  +  EQS+  K +   K+  L + Q      +Y F G
Sbjct: 40  GNGLKDKTKASKATEKPEIFEQSVMGKVQTNIKFHNLEDRQDYRDESVYTFCG 92


>SB_44756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = -2

Query: 396 HFNSQYNGNQPTMKSEKYSTIEKQAYTTQYVSHFVSSSFCGDSRAFIDMYAGYTKPIELH 217
           +F+++   N  T  +EKYST   + Y+T+    + + +    S    + Y+  TK  E +
Sbjct: 208 NFSTKATENYSTKATEKYSTKASENYSTKATEKYSTKAAENYSTKATEKYS--TKATEKY 265

Query: 216 INSAPKP-NTKYKPVNATKPKKMYN 145
              A +  +TK     +TK  K Y+
Sbjct: 266 STKATENFSTKATENYSTKATKNYS 290


>SB_13243| Best HMM Match : COX17 (HMM E-Value=1.7)
          Length = 483

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 248 YMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCI 400
           Y+  + +  P+K  D  WL  +     + +  YF + I  +F   WL KCI
Sbjct: 308 YLWGQDISDPRKFLDNTWLKVFKFQPLWKVKNYFGEQIALYFA--WLGKCI 356


>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -1

Query: 478  VVRTNDTVVDHEGPVVFSRQVAPDHEDAL*QPVQWKPADDEIGKVLHDRKTGVHHPICKP 299
            +V    +VV H+ PVV  R     H+  +   V  +P       ++H   T V HP  +P
Sbjct: 1381 IVIHRPSVVLHQAPVVVHRPAVVYHQPPV---VVHQPPPLVHQPIIHSHDTYVSHPFFEP 1437

Query: 298  F 296
            F
Sbjct: 1438 F 1438


>SB_5363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 248 YMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCI 400
           Y+  + +  P+K  D  WL  +     + +  YF + I  +F   WL KCI
Sbjct: 122 YLWGQDISDPRKFLDNTWLKVFKFQPLWKVKNYFGEQIALYFA--WLGKCI 170


>SB_24362| Best HMM Match : NOGCT (HMM E-Value=3.2)
          Length = 273

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/60 (26%), Positives = 24/60 (40%)
 Frame = -2

Query: 411 QITKMHFNSQYNGNQPTMKSEKYSTIEKQAYTTQYVSHFVSSSFCGDSRAFIDMYAGYTK 232
           Q+ +       N N+   K  KYS+  +Q Y   ++   VSS F      F   Y   T+
Sbjct: 137 QMVEFVITGNPNENKTHGKWPKYSSENRQVYQAAFIESGVSSDFLAQKADFWTRYLPQTE 196


>SB_45400| Best HMM Match : MAM (HMM E-Value=0)
          Length = 257

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 395 CIFVIWCYLPTEYNGSLVIYYRIIRP 472
           C+  + CY  + YN +  +YY  +RP
Sbjct: 162 CVEAVGCYRDSGYNRAFPVYYADLRP 187


>SB_43444| Best HMM Match : WSC (HMM E-Value=0.084)
          Length = 155

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = -3

Query: 524 WDLCWPYHRYDHDAS--GSKDE*YG 456
           W  CW  H+  H+A   GS D+ YG
Sbjct: 105 WGECWAGHKSQHNAKRHGSSDQCYG 129


>SB_20155| Best HMM Match : Fe_dep_repress (HMM E-Value=2.6)
          Length = 310

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = +2

Query: 269 ESPQKDDDTKWLTYWVVYACF-SIVEYFSDF-IVGWFPLYWLLKCIFVIWCYLPTEYNGS 442
           E P K+DD   +  WV+   F  +    S F IV W  +   L C     CY  T Y+  
Sbjct: 209 EEPGKEDDDNTVLRWVICLIFMPLYIVISIFGIVIWLLMAPFLICSKQDSCYANTTYD-- 266

Query: 443 LVIYYRIIRPYYQKHH 490
             IY +++    + +H
Sbjct: 267 --IYEKVVLAPVRAYH 280


>SB_18286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 8   GHEVKDRTMASKLQEYKDN-IEQSLNDKSK 94
           GH + D+T+ SKLQEY    I +++N K+K
Sbjct: 465 GHRLSDKTI-SKLQEYYGKAIRRNINKKAK 493


>SB_48325| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 872

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 23  DRTMASKLQEYKDNIEQSLNDKSKP 97
           DRT   K++E   N+++S +D SKP
Sbjct: 89  DRTKKDKVEERPPNLQKSFSDFSKP 113


>SB_35180| Best HMM Match : DUF795 (HMM E-Value=2.1)
          Length = 388

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 26  RTMASKLQEYKDNIEQSLNDKSKPWTKYFELAEQK 130
           R  +SKLQ+YK    Q+L+     W +Y +   +K
Sbjct: 190 RDKSSKLQQYKYEKTQALDSNFPKWKEYIQQEAKK 224


>SB_30408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 8   GHEVKDRTMASKLQEYKDN-IEQSLNDKSK 94
           GH + D+T+ SKLQEY    I +++N K+K
Sbjct: 414 GHRLSDKTI-SKLQEYYGKAIRRNINKKAK 442


>SB_52254| Best HMM Match : ANF_receptor (HMM E-Value=7.84727e-44)
          Length = 933

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/55 (18%), Positives = 28/55 (50%)
 Frame = +2

Query: 197 GFGAELICNSIGFVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFI 361
           GF   LI N+   +   Y +    + PQ  ++++++ + ++  C +++ Y   ++
Sbjct: 550 GFSVWLIYNAGLVIICTYQAFLVRKVPQNYNESRFIAFTMITICITVLVYVPSYL 604


>SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 633

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -2

Query: 393 FNSQYNGNQPTMKSEKYSTIEKQAYTTQYVSHF 295
           +N++YN +  T  + +Y+T     Y T+Y++ +
Sbjct: 334 YNTEYNTDYNTEYNTEYNTEYNTEYNTEYITEY 366


>SB_48121| Best HMM Match : Kelch_1 (HMM E-Value=0.023)
          Length = 1169

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 2   RGGHEVKDRTMASKLQEYK 58
           RGG + K RT+ SKL+++K
Sbjct: 157 RGGEQTKPRTIVSKLRDWK 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,258,118
Number of Sequences: 59808
Number of extensions: 410980
Number of successful extensions: 1595
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1554
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)