Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0825
(541 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36720.1 68417.m05210 abscisic acid-responsive HVA22 family p... 99 2e-21
At4g24960.1 68417.m03576 ABA-responsive protein (HVA22d) identic... 85 2e-17
At5g50720.1 68418.m06285 ABA-responsive protein (HVA22e) identic... 81 5e-16
At1g69700.1 68414.m08021 ABA-responsive protein (HVA22c) identic... 79 2e-15
At2g42820.1 68415.m05301 abscisic acid-responsive HVA22 family p... 76 1e-14
At1g74520.1 68414.m08633 ABA-responsive protein (HVA22a) identic... 73 9e-14
At5g42560.1 68418.m05180 abscisic acid-responsive HVA22 family p... 69 2e-12
At1g75700.1 68414.m08794 abscisic acid-responsive HVA22 family p... 69 2e-12
At2g36020.1 68415.m04423 abscisic acid-responsive HVA22 family p... 69 3e-12
At5g62490.1 68418.m07843 ABA-responsive protein (HVA22b) identic... 68 4e-12
At1g19950.1 68414.m02500 abscisic acid-responsive HVA22 family p... 67 6e-12
At5g38150.1 68418.m04598 expressed protein 30 0.86
At2g18950.1 68415.m02212 homogentisate phytylprenyltransferase f... 30 0.86
At3g30390.1 68416.m03836 amino acid transporter family protein l... 30 1.1
At2g28800.2 68415.m03502 chloroplast membrane protein (ALBINO3) ... 29 1.5
At2g28800.1 68415.m03501 chloroplast membrane protein (ALBINO3) ... 29 2.0
At4g25290.1 68417.m03637 deoxyribodipyrimidine photolyase family... 28 3.5
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 28 3.5
At5g38820.1 68418.m04695 amino acid transporter family protein l... 28 4.6
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 28 4.6
At2g31940.1 68415.m03901 expressed protein 28 4.6
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 28 4.6
At5g06260.1 68418.m00700 nucleolar protein-related contains weak... 27 6.1
At5g27950.1 68418.m03366 kinesin motor protein-related kinesin h... 27 8.0
At4g00590.1 68417.m00083 asparaginase 2 family protein very low ... 27 8.0
At1g61280.1 68414.m06907 expressed protein similar to SP|P57054 ... 27 8.0
>At4g36720.1 68417.m05210 abscisic acid-responsive HVA22 family
protein low similarity to SP|Q00765 Polyposis locus
protein 1 (TB2 protein) {Homo sapiens}; contains Pfam
profile PF03134: TB2/DP1, HVA22 family
Length = 227
Score = 98.7 bits (235), Expect = 2e-21
Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 5/123 (4%)
Frame = +2
Query: 161 GLVAFTGLYLVFG-FGAELI----CNSIGFVYPAYMSMKALESPQKDDDTKWLTYWVVYA 325
GL GL ++F + ++ C SIG P Y + KA+ES +++ K L YW Y
Sbjct: 17 GLTGEVGLRVLFSPLSSNIVLRTACCSIGIGLPVYSTFKAIESGDENEQQKMLIYWAAYG 76
Query: 326 CFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYRIIRPYYQKHHGRIDD 505
FS+VE F+D I+ WFPLY+ +K F++W LPT GS IY IRP+ +H R+D
Sbjct: 77 SFSLVEVFTDKIISWFPLYYHVKFAFLVWLQLPT-VEGSKQIYNNQIRPFLLRHQARVDQ 135
Query: 506 MAN 514
+ +
Sbjct: 136 LVD 138
>At4g24960.1 68417.m03576 ABA-responsive protein (HVA22d) identical
to AtHVA22d [Arabidopsis thaliana] GI:4884938
Length = 135
Score = 85.4 bits (202), Expect = 2e-17
Identities = 32/84 (38%), Positives = 54/84 (64%)
Frame = +2
Query: 236 VYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWC 415
+YP Y S+ A+ES K DD +WL YW++Y+ S+ E ++ W P+++ +K +FV W
Sbjct: 22 LYPLYASVIAMESTTKVDDEQWLAYWIIYSFLSLTELILQSLIEWIPIWYTVKLVFVAWL 81
Query: 416 YLPTEYNGSLVIYYRIIRPYYQKH 487
LP ++ G+ IY R++R ++KH
Sbjct: 82 VLP-QFQGAAFIYNRVVREQFKKH 104
>At5g50720.1 68418.m06285 ABA-responsive protein (HVA22e) identical
to AtHVA22e [Arabidopsis thaliana] GI:11225589
Length = 116
Score = 81.0 bits (191), Expect = 5e-16
Identities = 30/84 (35%), Positives = 54/84 (64%)
Frame = +2
Query: 236 VYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWC 415
+YP Y S+ A+ESP K DD +WL YW++Y+ ++ E ++ W P+++ K +FV W
Sbjct: 22 LYPLYASVIAIESPSKVDDEQWLAYWILYSFLTLSELILQSLLEWIPIWYTAKLVFVAWL 81
Query: 416 YLPTEYNGSLVIYYRIIRPYYQKH 487
LP ++ G+ IY +++R ++K+
Sbjct: 82 VLP-QFRGAAFIYNKVVREQFKKY 104
>At1g69700.1 68414.m08021 ABA-responsive protein (HVA22c) identical
to AtHVA22c [Arabidopsis thaliana] GI:4884936
Length = 184
Score = 78.6 bits (185), Expect = 2e-15
Identities = 34/85 (40%), Positives = 52/85 (61%)
Frame = +2
Query: 227 IGFVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFV 406
+ VYP Y S+KA+E+ +D +WLTYWV+YA S+ E + WFP++ +K +
Sbjct: 26 VTLVYPLYASVKAIETRSLPEDEQWLTYWVLYALISLFELTFSKPLEWFPIWPYMKLFGI 85
Query: 407 IWCYLPTEYNGSLVIYYRIIRPYYQ 481
W LP ++NG+ IY IRP+Y+
Sbjct: 86 CWLVLP-QFNGAEHIYKHFIRPFYR 109
>At2g42820.1 68415.m05301 abscisic acid-responsive HVA22 family
protein contains Pfam profile PF03134: TB2/DP1, HVA22
family
Length = 158
Score = 76.2 bits (179), Expect = 1e-14
Identities = 32/88 (36%), Positives = 51/88 (57%)
Frame = +2
Query: 212 LICNSIGFVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLL 391
L+ + +YP Y S +A+ESP DD +WLTYW++Y+ +I E ++ W P + L
Sbjct: 14 LVGPGVMLLYPLYASFRAIESPTMLDDQQWLTYWIIYSLITIFELSVWRVLAWLPFWPYL 73
Query: 392 KCIFVIWCYLPTEYNGSLVIYYRIIRPY 475
K +F +W LP ++G+ IY +R Y
Sbjct: 74 KLLFCMWLVLPM-FSGAAYIYSNFVRQY 100
>At1g74520.1 68414.m08633 ABA-responsive protein (HVA22a) identical
to AtHVA22a [Arabidopsis thaliana] GI:4884932
Length = 177
Score = 73.3 bits (172), Expect = 9e-14
Identities = 27/84 (32%), Positives = 50/84 (59%)
Frame = +2
Query: 227 IGFVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFV 406
+ VYP Y S++A+E+ DD +WLTYWV+Y+ +++E ++ W P++ +K I
Sbjct: 24 VSLVYPLYASVQAIETQSHADDKQWLTYWVLYSLLTLIELTFAKLIEWLPIWSYMKLILT 83
Query: 407 IWCYLPTEYNGSLVIYYRIIRPYY 478
W +P ++G+ +Y +RP +
Sbjct: 84 CWLVIP-YFSGAAYVYEHFVRPVF 106
>At5g42560.1 68418.m05180 abscisic acid-responsive HVA22 family
protein weak similarity to SP|Q00765 Polyposis locus
protein 1 (TB2 protein) {Homo sapiens}; contains Pfam
profile PF03134: TB2/DP1, HVA22 family
Length = 296
Score = 68.9 bits (161), Expect = 2e-12
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Frame = +2
Query: 227 IGFVYPAYMSMKALES--PQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCI 400
+G+ YPAY K +E P+ + W YW++ AC ++ E D V W P+Y K
Sbjct: 14 LGYAYPAYECYKTVEKNRPEIEQLRFWCQYWILVACLTVFERVGDAFVSWVPMYSEAKLA 73
Query: 401 FVIWCYLPTEYNGSLVIYYRIIRPYYQKHHGRID 502
F I+ + P + G+ +Y RPY +H ID
Sbjct: 74 FFIYLWYP-KTRGTTYVYESFFRPYLSQHENDID 106
>At1g75700.1 68414.m08794 abscisic acid-responsive HVA22 family
protein weak similarity to SP|Q00765 Polyposis locus
protein 1 (TB2 protein) {Homo sapiens}; contains Pfam
profile PF03134: TB2/DP1, HVA22 family
Length = 166
Score = 68.9 bits (161), Expect = 2e-12
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Frame = +2
Query: 230 GFVYPAYMSMKALE--SPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIF 403
G+ YPAY K +E P+ W YW++ A +I E D +V W P+Y K F
Sbjct: 4 GYAYPAYECFKTVELNKPEIQQLQFWCQYWIIVAALTIFERIGDALVSWLPMYSEAKLAF 63
Query: 404 VIWCYLPTEYNGSLVIYYRIIRPYYQKHHGRID 502
I+ + P + G+ +Y RPY KH ID
Sbjct: 64 FIYLWFP-KTKGTTYVYDSFFRPYIAKHENEID 95
>At2g36020.1 68415.m04423 abscisic acid-responsive HVA22 family
protein weak similarity to SP|Q00765 Polyposis locus
protein 1 (TB2 protein) {Homo sapiens}; contains Pfam
profile PF03134: TB2/DP1, HVA22 family
Length = 258
Score = 68.5 bits (160), Expect = 3e-12
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Frame = +2
Query: 200 FGAELICNSIGFVYPAYMSMKALESPQKDDDTK--WLTYWVVYACFSIVEYFSDFIVGWF 373
F L+ +G+ YPA+ K +E + D + W YW++ A S E DF + W
Sbjct: 5 FIIRLLVLILGYTYPAFECFKTVEKNKVDIEELRFWCQYWILLALISSFERVGDFFISWL 64
Query: 374 PLYWLLKCIFVIWCYLPTEYNGSLVIYYRIIRPYYQKHHGRID 502
PLY +K +F ++ + P + G+ +Y +++PY +H ID
Sbjct: 65 PLYGEMKVVFFVYLWYP-KTKGTRHVYETLLKPYMAQHETEID 106
>At5g62490.1 68418.m07843 ABA-responsive protein (HVA22b) identical
to AtHVA22b [Arabidopsis thaliana] GI:4884934
Length = 167
Score = 68.1 bits (159), Expect = 4e-12
Identities = 31/88 (35%), Positives = 44/88 (50%)
Frame = +2
Query: 227 IGFVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFV 406
I VYP Y S++A+ES DD +WLTYW +Y+ + E ++ W PLY K
Sbjct: 24 ISLVYPLYASVRAIESRSHGDDKQWLTYWALYSLIKLFELTFFRLLEWIPLYPYAKLALT 83
Query: 407 IWCYLPTEYNGSLVIYYRIIRPYYQKHH 490
W LP NG+ +Y +R + H
Sbjct: 84 SWLVLP-GMNGAAYLYEHYVRSFLLSPH 110
>At1g19950.1 68414.m02500 abscisic acid-responsive HVA22 family
protein weak similarity to SP|Q00765 Polyposis locus
protein 1 (TB2 protein) {Homo sapiens}; contains Pfam
profile PF03134: TB2/DP1, HVA22 family
Length = 315
Score = 67.3 bits (157), Expect = 6e-12
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Frame = +2
Query: 230 GFVYPAYMSMKALES--PQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIF 403
G+ YPAY KA+E P+ W YW++ A +I E D + W PLY K F
Sbjct: 15 GYAYPAYECYKAVEKNKPEMQQLRFWCQYWILVAALTIFERVGDALASWVPLYCEAKLAF 74
Query: 404 VIWCYLPTEYNGSLVIYYRIIRPYYQKHHGRID 502
I+ + P + G+ +Y +PY KH ID
Sbjct: 75 FIYLWFP-KTRGTTYVYDSFFQPYVAKHENEID 106
>At5g38150.1 68418.m04598 expressed protein
Length = 574
Score = 30.3 bits (65), Expect = 0.86
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 207 APKPNTKYKPVNATKPKKMYNLFTPTF 127
+PKP K+ PV KP++ ++ TPTF
Sbjct: 528 SPKPVGKFTPVQRGKPRRYSSVGTPTF 554
>At2g18950.1 68415.m02212 homogentisate phytylprenyltransferase
family protein (HPT1) / tocopherol phytyltransferase
family protein (TPT1) identical to gi:17104828; contains
Pfam profile PF01040: UbiA prenyltransferase family;
identical to cDNA tocopherol polyprenyltransferase
(TPT1) GI:17104827
Length = 393
Score = 30.3 bits (65), Expect = 0.86
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 317 VYACFSIVEYFSDFIVGWFPLYWLLKCIFVI 409
+ A FSI+ ++ +IVG +PL+W L F++
Sbjct: 186 IVASFSIMSFWLGWIVGSWPLFWALFVSFML 216
>At3g30390.1 68416.m03836 amino acid transporter family protein low
similarity to neuronal glutamine transporter [Rattus
norvegicus] GI:6978016; belongs to INTERPRO:IPR002422
amino acid/polyamine transporter, family II
Length = 460
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +2
Query: 152 IFLGLVAFTGLYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDDDTKWLTYWVVYACF 331
IFLG ++ F F +GF++PA + +K + DT + +V A
Sbjct: 380 IFLGANFIPSIWDAFQFTGATAAVCLGFIFPASIILKDRHDKATNRDTTLAIFMIVLAVL 439
Query: 332 S-IVEYFSD 355
S + +SD
Sbjct: 440 SNAIAIYSD 448
>At2g28800.2 68415.m03502 chloroplast membrane protein (ALBINO3)
Oxa1p homolog {PMID:11148275}; identical to chloroplast
membrane protein ALBINO3 [Arabidopsis thaliana]
GI:2209332
Length = 348
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 248 YMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLL 391
Y+SM+ ++ PQ DD + T V ++ YF+ + +YWL+
Sbjct: 293 YVSMEIMKPPQTDDPAQKNTLLVFKFLPLMIGYFALSVPSGLSIYWLV 340
>At2g28800.1 68415.m03501 chloroplast membrane protein (ALBINO3)
Oxa1p homolog {PMID:11148275}; identical to chloroplast
membrane protein ALBINO3 [Arabidopsis thaliana]
GI:2209332
Length = 462
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 248 YMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWL 388
Y+SM+ ++ PQ DD + T V ++ YF+ + +YWL
Sbjct: 293 YVSMEIMKPPQTDDPAQKNTLLVFKFLPLMIGYFALSVPSGLSIYWL 339
>At4g25290.1 68417.m03637 deoxyribodipyrimidine photolyase family
protein / DNA photolyase family protein contains Pfam
domain, PF00875: deoxyribodipyrimidine photolyase
Length = 581
Score = 28.3 bits (60), Expect = 3.5
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +2
Query: 44 LQEYKDNIEQSLNDKSKPWTKYFELAEQKVGVNRLYIFLGLVAFTGLYL--VFGFGAELI 217
L+ Y+DN++ +N K++ WT + N +Y L ++ V G A +
Sbjct: 356 LEHYRDNVDNIVNSKNRVWTITVLGFGKSEKPNIIYTELLWAELLRDFMAEVVGEPAHCV 415
Query: 218 CNSIGFVYPAYMS 256
NSIG + A M+
Sbjct: 416 GNSIGGYFVALMA 428
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 28.3 bits (60), Expect = 3.5
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = -3
Query: 452 RSRGTRCIQSAGSTRSRRCTLTASTMETSRR*NRKSTPR*KNRRTPPNM*AILYRHPSAV 273
+SR R S RSRR + S+ E+S RKS+ + KNR P RH S+
Sbjct: 802 KSRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPG--KSRRRHVSSR 859
Query: 272 TP 267
+P
Sbjct: 860 SP 861
>At5g38820.1 68418.m04695 amino acid transporter family protein low
similarity to N system amino acids transporter NAT-1
[Mus musculus] GI:7406950; contains Pfam profile
PF01490: Transmembrane amino acid transporter protein
Length = 456
Score = 27.9 bits (59), Expect = 4.6
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +2
Query: 152 IFLGLVAFTGLYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDDDTKWLTYWVVYACF 331
IFLG ++ F F IGF++PA + +K + D +V A F
Sbjct: 374 IFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAVILKDRHNQATKRDKTIAICMIVLAVF 433
Query: 332 S-IVEYFSD 355
S + +SD
Sbjct: 434 SNAIAIYSD 442
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 221 NSIGFVYPAYMSMKALESPQKDDDTKWLTYWVVYACF 331
NS GFVY + S++A + Q+ +W ++ A F
Sbjct: 479 NSAGFVYLRFQSVEAAAAAQRAMHMRWFAQKMISATF 515
>At2g31940.1 68415.m03901 expressed protein
Length = 120
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +2
Query: 227 IGFVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPL 379
+G + + + + ES + T W +++ F +V Y S F WFPL
Sbjct: 69 VGGMMTSLIHLNERESLYRAGGTPWGVAFMLVFLFFMVSYQSQFQERWFPL 119
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 884
Score = 27.9 bits (59), Expect = 4.6
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -3
Query: 452 RSRGTRCIQSAGSTRSRRCTLTASTMETSRR*NRKSTPR*KNRRTPP 312
+SR R S RSRR + S+ E+S RKS+ + KNR P
Sbjct: 832 KSRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSP 878
>At5g06260.1 68418.m00700 nucleolar protein-related contains weak
similarity to nucleolar protein C7C (GI:13540302)
[Rattus norvegicus]
Length = 424
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +2
Query: 401 FVIWC-YLPT--EYNGSLVIYYRIIRPYYQKHHGRIDDMANTD 520
F WC ++PT ++ GSL++ +RP YQ H +D ++D
Sbjct: 172 FRSWCSFVPTIRKFLGSLLMPPSTVRPGYQVPHLLYEDSVSSD 214
>At5g27950.1 68418.m03366 kinesin motor protein-related kinesin
heavy chain-like protein, potato, PIR:T07397
Length = 625
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 273 DSRAFIDMYAGYTKPIELHINSAPKPNTKYKPV--NATKPKKMYNLFTP 133
DSR+ + YTKP++ NS P T + + N+ + K M + +P
Sbjct: 550 DSRSKALLRRSYTKPLQAAANSGTPPETPKRHIKDNSLQRKNMNDTSSP 598
>At4g00590.1 68417.m00083 asparaginase 2 family protein very low
similarity to glycosylasparaginase [SP|P20933] from Homo
sapiens; contains Pfam profile PF01112: Asparaginase 2
Length = 408
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 167 VAFTGLYLVFGFGAELICNSIGF--VYPAYMSMKALESPQKDDDTK 298
V+ G YL+ GF A C S+ PA +MK L S + +K
Sbjct: 279 VSGAGEYLMRGFAARECCTSLALSQAGPASAAMKVLRSVMHQESSK 324
>At1g61280.1 68414.m06907 expressed protein similar to SP|P57054
Down syndrome critical region protein 5 (Down syndrome
critical region protein C) {Homo sapiens}; expression
supported by MPSS
Length = 137
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 398 IFVIWCYLPTEYNGSLVIYY 457
IF+IW Y+P ++ S+ IYY
Sbjct: 31 IFLIWGYVPDKFLESIGIYY 50
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,644,921
Number of Sequences: 28952
Number of extensions: 280629
Number of successful extensions: 784
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -