Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0824
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_02_0018 - 8595479-8595678,8595782-8595935,8596396-8597032,859...    30   1.6  
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885...    29   2.8  
03_02_0790 - 11212540-11212698,11212777-11212873,11212974-112130...    29   2.8  
01_06_0115 + 26585481-26586401,26586501-26586556,26586747-265868...    28   6.4  
06_01_0730 + 5370575-5370761,5371395-5371438,5372057-5372204,537...    27   8.5  

>04_02_0018 -
           8595479-8595678,8595782-8595935,8596396-8597032,
           8597126-8597217
          Length = 360

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = +1

Query: 142 GGRAPLG*TSASAILCEHPR*NYTQICTNY*KTYKNQFRWEGWFHITSGRYNRPICSGSR 321
           G R  +G  +AS + CEH R +    C     TY   F W+G   IT G Y+  + +  R
Sbjct: 89  GDRVGVGCIAASCLDCEHCRRSEENYCDKVALTYNGIF-WDG--SITYGGYSGMLVAHKR 145


>05_07_0328 +
           29286109-29286120,29286982-29287146,29288427-29288589,
           29288625-29288903,29289047-29289122,29289725-29289787,
           29292116-29292164,29292413-29292504,29293017-29293068,
           29293209-29293271,29293382-29293431,29293941-29294016,
           29294444-29294656,29294763-29294869,29294966-29295074,
           29295489-29295689,29295773-29296033,29296154-29296171,
           29296287-29296397,29296755-29297030,29297108-29297382,
           29297814-29298165,29298371-29298655,29298715-29299261,
           29301658-29301781,29301871-29301946,29302062-29302136,
           29302300-29302353,29302833-29302892,29302977-29303093,
           29303228-29303361,29303480-29303682,29303879-29303976,
           29304358-29304461,29304537-29304702,29304803-29304925,
           29305047-29305129,29305217-29305358,29305523-29305549,
           29305784-29305854,29305930-29306518
          Length = 2046

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +2

Query: 293 TTDQFVVGVER-KFLFIQWDGEDGSKVAVLKELGEVDK--DRPNNRINDGKADPRGRL 457
           T D   +  ER KF  +QWDGE      + + +G+V     RP +    G  DP  RL
Sbjct: 272 TQDFLFIATERYKFCVLQWDGEKSE--LLTRAMGDVSDRIGRPTDNGQIGIIDPDCRL 327



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 359 GSKVAVLKELGEVDKDRPNNRIN 427
           G KVA  K+L   DKDRP+++ N
Sbjct: 8   GGKVAEPKDLAATDKDRPSSKKN 30


>03_02_0790 -
           11212540-11212698,11212777-11212873,11212974-11213030,
           11213291-11213379,11213463-11213549,11213820-11213935,
           11214026-11214281,11214361-11214510,11214948-11215106,
           11215456-11215493,11215972-11216063,11216528-11216682,
           11217185-11217253
          Length = 507

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 399 TKTDLITGLMMAKQILVGGCLLELWVMKILQVTLRETKPLFTNWIQL 539
           TKT L    ++    L  GCL   ++ K+ ++T  +  P +T+WI +
Sbjct: 358 TKTKLYIKALIVSIALTAGCLWYEYIYKLDKITYNKYHP-YTSWIPI 403


>01_06_0115 +
           26585481-26586401,26586501-26586556,26586747-26586876,
           26587396-26587506,26587606-26587674,26588125-26588198,
           26588446-26588581,26588702-26588795,26588901-26589000,
           26589100-26589224,26589597-26589634,26589662-26589742,
           26589868-26589972,26590102-26590166,26590371-26590572,
           26591073-26591159,26591238-26591294,26591369-26591458,
           26591572-26591658,26592204-26592278,26592363-26592463,
           26592565-26592655
          Length = 964

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 282 GNMKPTLPSKLVFVCFSVVGTYL 214
           G  K + P K+  +CF + GTYL
Sbjct: 427 GRWKSSKPDKVAVICFGMEGTYL 449


>06_01_0730 +
           5370575-5370761,5371395-5371438,5372057-5372204,
           5372289-5372397,5373349-5373863,5374571-5374808,
           5375296-5375560,5375740-5375844,5375950-5376015,
           5376562-5377020,5377267-5377464,5378149-5378211
          Length = 798

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +2

Query: 356 DGSKVAVLKELGEVDKDRPNNRINDGKADPRGRLFA-GTMGHEDPPGNFERNKASLYKL 529
           +G +V     LG V  D P   ++         L A  T GHEDP      N+A LY+L
Sbjct: 465 NGEEVENDDGLGLVQSDTPLAPVDGQNMQSASNLTAFSTYGHEDP-NMHPSNEAQLYRL 522


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,943,693
Number of Sequences: 37544
Number of extensions: 326815
Number of successful extensions: 746
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)