Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0824
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3796| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.70 
SB_58332| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_5014| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-07)           30   1.6  
SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)               29   3.8  
SB_49169| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_49167| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_15766| Best HMM Match : Cor1 (HMM E-Value=5.2)                      28   6.6  

>SB_3796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1051

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
 Frame = +2

Query: 218 YVPTTEKHTKTSLDGRVGFILPVEGTTD-QFV---VGVER-KFLFIQWDGEDGSKVAVLK 382
           Y+ + + H   ++ G+ G I+ V  TT+  FV   V ++R +++  QW G D +      
Sbjct: 308 YLKSAKIHN-VNVRGKRGNIVQVFPTTEYDFVPNTVTMKRNEYVHFQWTGSDTNPANNAG 366

Query: 383 ELGEVDKDRPNNRINDGKADPRGRLFAGTMGH 478
           E G+   DR N  + +GKA P G     T GH
Sbjct: 367 E-GKAGTDRHNVLLLEGKAYPVGVSRPFTYGH 397



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
 Frame = +2

Query: 218  YVPTTEKHTKTSLDGRVGFILPVEGTTD-QFV---VGVER-KFLFIQWDGEDGSKVAVLK 382
            Y+ + + H   ++ G+ G I+ V  TT+  FV   V ++R +++  QW G D +      
Sbjct: 930  YLKSAKIHN-VNVRGKRGNIVQVFPTTEYDFVPNSVTMKRNEYVHFQWTGSDTNPADNAG 988

Query: 383  ELGEVDKDRPNNRINDGKADPRGRLFAGTMGH 478
            E G+   DR N  + +GKA P       T GH
Sbjct: 989  E-GKAGTDRHNVLLLEGKAYPEAVSRPFTYGH 1019


>SB_58332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 101 MSVRIEKITEPLTLGEGPHWDERQQALYFVSIQDKTIH 214
           +SV ++ + E   L EGPHWDE    L ++    K +H
Sbjct: 7   VSVLLKNVGE---LCEGPHWDEASGKLVWMDCMQKLVH 41


>SB_5014| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-07)
          Length = 194

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = +1

Query: 235 KTYKNQFRWE----GWFHITSGRYNRPICSGSRTQVPFHT 342
           K Y   F W     G FHI S      I + +RT++PFHT
Sbjct: 82  KKYYPYFEWPPFCYGLFHILSADVVPEILNHTRTRIPFHT 121


>SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = +1

Query: 235  KTYKNQFRWE----GWFHITSGRYNRPICSGSRTQVPFHT 342
            K Y   F W     G FHI S      I + +RT++PFHT
Sbjct: 932  KKYYPYFEWPPFCYGLFHILSADVVPEILNHTRTRIPFHT 971


>SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)
          Length = 454

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/86 (20%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = +2

Query: 149 GPHWDERQQALYFVSIQDKTIHKYVPTTEKHTKTSLDGRVGFILPVEGTTDQF-VVGVER 325
           GP WD+ ++++     + + + +Y+PT  + +   L+ R+  +   +G   ++ VV +E 
Sbjct: 73  GPDWDKYRESIKSQVTRPRELAEYIPTFNQISDELLE-RLNSLRTPKGRNYEYEVVNLEE 131

Query: 326 KFLFIQWDGEDGSKVAVLKELGEVDK 403
           +   I+W  E  +     +  G ++K
Sbjct: 132 E--LIKWSFETATYAMFNQRFGYMEK 155


>SB_49169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 449 GRLFAGTMGHEDPPGNFERNKASLYKLDSAK 541
           G L    +GHE+ PG  E+ KA+L ++ + +
Sbjct: 36  GSLEDEVLGHEEDPGMMEKKKAALKRMGARR 66


>SB_49167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 449 GRLFAGTMGHEDPPGNFERNKASLYKLDSAK 541
           G L    +GHE+ PG  E+ KA+L ++ + +
Sbjct: 36  GSLEDEVLGHEEDPGMMEKKKAALKRMGARR 66


>SB_15766| Best HMM Match : Cor1 (HMM E-Value=5.2)
          Length = 249

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 284 VEGTTDQFVVGVERKFLF--IQWDGEDGSKVAVLKELGEVDKDRPN 415
           V+G T   V+G E + ++    WDG+      VLK+ GE  + R N
Sbjct: 47  VQGATLLTVIGEEAQDVYSTFNWDGDINKIEPVLKKFGEYCEPRRN 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,975,292
Number of Sequences: 59808
Number of extensions: 381028
Number of successful extensions: 789
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)