Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0823
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual      48   1e-06
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa...    28   0.87 

>SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 2/152 (1%)
 Frame = +1

Query: 127 LQGIRLVTFDATNTLLKFKMVPSQYYTKIARTYGYRGSESDAQNKMRENFKMMWEQHPNF 306
           +Q I+LVTFDA  T+L         Y+++A+ YG   +  + ++     FK   E+H N 
Sbjct: 7   IQKIKLVTFDAFGTILHLSKPVPIVYSEVAQKYGVHATIDEIEH---NTFKDFSEKHKNH 63

Query: 307 GRNSIL-WEEWWRQVVKLTLQDHLPVGADTRSLGNTLINDFKTSKCWDV-AAGSDTLLQX 480
           G+ S L   +WW +V++ +    +P       +   L + F     + +     D L + 
Sbjct: 64  GKKSGLNPHDWWIKVIEHSFPTPVPA-----EMAEELWSYFSKKTGYTIHPLLIDFLKRN 118

Query: 481 XXXXXXXXXXXSNSDPRLYDILQNLGLSKYFD 576
                      SN+D R+  +L++ G+    D
Sbjct: 119 KEERKYIIGIISNTDERIRTVLEDYGIDHLID 150


>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
           Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 179 SKWYPRNITQ-RLHVHMVTGEAKVMLKIR*GKTLK*CGNSILILEGILSSGKNGGDKW 349
           S+W  R     RL  H  TG+ ++++  R  KTLK C N +L+ E  L+        W
Sbjct: 111 SEWKERGTGDARLLKHKETGKTRLVM--RRDKTLKVCANHLLMPEMKLTPNVGSDRSW 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,893
Number of Sequences: 5004
Number of extensions: 45922
Number of successful extensions: 87
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)