Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0823
(582 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g14310.1 68414.m01696 haloacid dehalogenase-like hydrolase fa... 36 0.026
At2g41250.1 68415.m05094 haloacid dehalogenase-like hydrolase fa... 33 0.11
At4g20200.1 68417.m02953 terpene synthase/cyclase family protein... 29 2.3
At2g31820.1 68415.m03886 ankyrin repeat family protein contains ... 29 3.0
At5g58590.1 68418.m07342 Ran-binding protein 1, putative / RanBP... 28 4.0
At4g01210.1 68417.m00159 glycosyltransferase family protein 1 co... 28 5.2
At3g11160.1 68416.m01353 expressed protein 28 5.2
At3g48250.1 68416.m05266 pentatricopeptide (PPR) repeat-containi... 27 6.9
At2g30060.1 68415.m03656 Ran-binding protein 1b (RanBP1b) nearly... 27 6.9
At2g24690.1 68415.m02948 transcriptional factor B3 family protei... 27 6.9
At4g33280.1 68417.m04735 transcriptional factor B3 family protei... 27 9.1
At4g03440.1 68417.m00471 ankyrin repeat family protein contains ... 27 9.1
At1g05640.1 68414.m00585 ankyrin repeat family protein contains ... 27 9.1
>At1g14310.1 68414.m01696 haloacid dehalogenase-like hydrolase
family protein contains InterPro accession IPR005834:
Haloacid dehalogenase-like hydrolase
Length = 254
Score = 35.5 bits (78), Expect = 0.026
Identities = 29/160 (18%), Positives = 58/160 (36%)
Frame = +1
Query: 103 TSNPLEMCLQGIRLVTFDATNTLLKFKMVPSQYYTKIARTYGYRGSESDAQNKMRENFKM 282
T P++ G+ L DA TLL+ + Y + + YG + + ++ + + F
Sbjct: 34 TGKPIKRAYDGLLL---DAGGTLLQLSKPVHETYASLGQKYGLKTTPAEIKEGFKRVFSA 90
Query: 283 MWEQHPNFGRNSILWEEWWRQVVKLTLQDHLPVGADTRSLGNTLINDFKTSKCWDVAAGS 462
W + + + +W+ VV G + + + W + G+
Sbjct: 91 PWPEKLRYQGDG---RPFWKLVVSEA------TGCSDNDYFEDVYQYYANGEAWHLPEGA 141
Query: 463 DTLLQXXXXXXXXXXXXSNSDPRLYDILQNLGLSKYFDFI 582
+ SN D RL +L++L + FD +
Sbjct: 142 YETMSLLKDAGVKMAVVSNFDTRLRKLLKDLNVIDMFDAV 181
>At2g41250.1 68415.m05094 haloacid dehalogenase-like hydrolase
family protein low similarity to SP|Q94915 Rhythmically
expressed gene 2 protein (DREG-2) {Drosophila
melanogaster}; contains InterPro accession IPR005834:
Haloacid dehalogenase-like hydrolase
Length = 290
Score = 33.5 bits (73), Expect = 0.11
Identities = 31/145 (21%), Positives = 54/145 (37%), Gaps = 2/145 (1%)
Frame = +1
Query: 154 DATNTLLKFKMVPSQYYTKIARTYGYRGSESDAQNKMRENFKMMW-EQHPNFGRNSILWE 330
DA TLL +Q Y I YG SE++ + R ++ W H + ++
Sbjct: 83 DAVGTLLVPAQPTAQIYKNIGEKYGVEYSEAEILTRYRRAYQKPWGGSHLRYVNDA---R 139
Query: 331 EWWRQVVKLTLQDHLPVGADTRSLGNTLINDFKTSKCWDVA-AGSDTLLQXXXXXXXXXX 507
+W+ +V + G L + F T + W + + + +
Sbjct: 140 PFWQYIVTAS------TGCSDSQYFEELYSYFTTEQAWKLCDPDAGKVFKAIKEAGVKVA 193
Query: 508 XXSNSDPRLYDILQNLGLSKYFDFI 582
SN D RL +L+ L +FD +
Sbjct: 194 IVSNFDTRLRPLLRALRCEDWFDAV 218
>At4g20200.1 68417.m02953 terpene synthase/cyclase family protein
5-epi-aristolochene synthase, Nicotiana tabacum,
PATX:G505588
Length = 604
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 106 SNPLE-MCLQGIRLVTFDATNTLLKFKMVPSQYYTKIARTYGYRGSESDAQNK 261
S PL+ + L+ +TFD + KFK +P+ +T + SE DA K
Sbjct: 39 SKPLKHIRLKATNTLTFDDQERIRKFKKLPTSEWTHYGHSISIDVSEMDALRK 91
>At2g31820.1 68415.m03886 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 662
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/37 (48%), Positives = 21/37 (56%)
Frame = -2
Query: 455 AATSQHLEVLKSLIKVFPKLLVSAPTGR*SCKVSLTT 345
AA HLEVLK L++ FP L A T SC +L T
Sbjct: 231 AAKQGHLEVLKILLETFPNL---AMTTDLSCTTALHT 264
>At5g58590.1 68418.m07342 Ran-binding protein 1, putative / RanBP1,
putative strong similarity to Ran binding proteins from
Arabidopsis thaliana atranbp1a [Arabidopsis thaliana]
GI:2058282, atranbp1b [Arabidopsis thaliana] GI:2058284;
contains Pfam profile PF00638: RanBP1 domain
Length = 219
Score = 28.3 bits (60), Expect = 4.0
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 179 SKWYPRNI-TQRLHVHMVTGEAKVMLKIR*GKTLK*CGNSILILEGILSSGKNGGDK 346
++W R T +L H TG KV L +R KTLK C N LI G+ +G +K
Sbjct: 63 NQWKERGAGTVKLLKHKETG--KVRLVMRQSKTLKICANH-LISSGMSVQEHSGNEK 116
>At4g01210.1 68417.m00159 glycosyltransferase family protein 1
contains Pfam profile: PF00534 Glycosyl transferases
group 1
Length = 981
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 280 MMWEQHPNFGRNSILWEEWWRQVVKLTLQDHLPVGADT-RSLGNTL 414
+M EQH R +W +W+ T+ + L AD+ R +G+ L
Sbjct: 863 LMQEQHKQKNRRGKMWVKWFDYTTLKTMDEDLAEEADSDRRVGHWL 908
>At3g11160.1 68416.m01353 expressed protein
Length = 145
Score = 27.9 bits (59), Expect = 5.2
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +1
Query: 172 LKFKMVPSQYYTKIARTYGYRGSESDAQNKMRENFKMMWEQHPNFGRNSILWEE-WWRQV 348
L+ KM P + R SESD + KM +WE R+S LWEE W +
Sbjct: 70 LRKKMWPELKDKEWFRITSRMWSESDIRKKMLRMRSDLWES-MGVSRSSDLWEEKMWDYL 128
Query: 349 VK 354
K
Sbjct: 129 TK 130
>At3g48250.1 68416.m05266 pentatricopeptide (PPR) repeat-containing
protein vacontains Pfam profile PF01535: PPR repeat
Length = 621
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -1
Query: 348 HLSPPFFPEDRIPSKIRMLF--PHHFKVFPHL 259
H+ F+ E R+ +LF PHHFK P +
Sbjct: 582 HVIEAFYREGRLTDAKNLLFICPHHFKTHPKI 613
>At2g30060.1 68415.m03656 Ran-binding protein 1b (RanBP1b) nearly
identical to atranbp1b [Arabidopsis thaliana] GI:2058284
Length = 217
Score = 27.5 bits (58), Expect = 6.9
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 179 SKWYPRNI-TQRLHVHMVTGEAKVMLKIR*GKTLK*CGNSILILEGILSSGKNGGDK 346
S+W R T + H V+G K+ L +R KTLK C N L+ G+ G DK
Sbjct: 66 SQWKERGAGTVKFLKHRVSG--KIRLVMRQSKTLKICANH-LVGSGMSVQEHAGNDK 119
>At2g24690.1 68415.m02948 transcriptional factor B3 family protein
low similarity to reproductive meristem protein 1
[Arabidopsis thaliana] GI:13604227; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 682
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 453 GWKRYIAANNKKEGDSY 503
GWK ++ AN K GD+Y
Sbjct: 92 GWKSFVKANGLKTGDTY 108
>At4g33280.1 68417.m04735 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 461
Score = 27.1 bits (57), Expect = 9.1
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 450 SGWKRYIAANNKKEGD 497
+GWK+++ NN +EGD
Sbjct: 406 TGWKKFVQDNNLREGD 421
>At4g03440.1 68417.m00471 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 751
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 455 AATSQHLEVLKSLIKVFPKLLV 390
AA HLE++KS++ FP LL+
Sbjct: 132 AAAFGHLELVKSIVSKFPSLLL 153
>At1g05640.1 68414.m00585 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 627
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 455 AATSQHLEVLKSLIKVFPKLLVSAPTGR*SCKVSLTT 345
AA H+E LK L++ FP L ++ SC +L T
Sbjct: 195 AAKQGHIEALKKLLETFPNLAMTVDL---SCTTALHT 228
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,984,896
Number of Sequences: 28952
Number of extensions: 240776
Number of successful extensions: 570
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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