Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0819
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   6.5  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   6.5  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   8.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.6  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 195 NENHLKFKVVTLKKKNTILYKI 130
           N+ +  F V+T  KKN  +YK+
Sbjct: 441 NQLYTAFDVLTDPKKNPNVYKV 462


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 195 NENHLKFKVVTLKKKNTILYKI 130
           N+ +  F V+T  KKN  +YK+
Sbjct: 441 NQLYTAFDVLTDPKKNPNVYKV 462


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +2

Query: 275 IIYALFLCIYWKLI 316
           I++ LF+ +YW ++
Sbjct: 372 ILFMLFIILYWPIL 385


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 1   WIPRAAGIRHEGQLQP 48
           W+P+   +RH+G   P
Sbjct: 132 WVPQKYRLRHKGDGSP 147


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 1   WIPRAAGIRHEGQLQP 48
           W+P+   +RH+G   P
Sbjct: 132 WVPQKYRLRHKGDGSP 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,552
Number of Sequences: 438
Number of extensions: 1862
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)