Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0818
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S...    26   2.8  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    25   4.8  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    25   8.4  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    25   8.4  

>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
           Sad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 440 IVEXGHEFSSKQFYESD 390
           +V+ GHE S+  FYESD
Sbjct: 96  VVKNGHEASTNVFYESD 112


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 97  NQCTIRIDCSSIINRKEGIIDQLLFPNGRG*SYHRRWRTDAITS 228
           N  T R   + ++N + G+    +F +G G  YH     D  T+
Sbjct: 272 NTATRRALMNGVLNGRNGLGSIFVFASGNGGHYHDNCNFDGYTN 315


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 59  IFFITKYSFLDRYLVPNS 6
           +FF+T Y  +D YL P+S
Sbjct: 369 MFFLTIYILIDAYLFPSS 386


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 79  QLNQQYEFFLSRSTLFSTATSCRI 8
           +L  +Y   LS+S +FS A SCR+
Sbjct: 358 KLEAKYLNNLSKSLMFSNAISCRL 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,884,662
Number of Sequences: 5004
Number of extensions: 33906
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)