Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0818
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0045 - 25393185-25394431,25394837-25395166,25395450-25396386     29   2.8  
06_03_0870 + 25557988-25558309,25558798-25559011,25559110-255593...    27   8.5  

>02_05_0045 - 25393185-25394431,25394837-25395166,25395450-25396386
          Length = 837

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -1

Query: 264 GFCFSTMDG--APTTGDCVGSPSSMIRLSASIR 172
           G+C S  DG   PT G C G     I+LS  +R
Sbjct: 160 GYCVSRCDGEKVPTEGPCNGKGCCSIKLSRDLR 192


>06_03_0870 +
           25557988-25558309,25558798-25559011,25559110-25559342,
           25559473-25559630,25559900-25560001
          Length = 342

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -3

Query: 385 SFRFFVSPPITPRSFYKRRHNFTFGIRASPFLFDVSVNASRF 260
           SFR FV P   P +FY+     T G  AS   F  ++  SRF
Sbjct: 4   SFRVFVYPDGDPGTFYQTPRKLT-GKYASEGYFFQNIRESRF 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,335,242
Number of Sequences: 37544
Number of extensions: 193047
Number of successful extensions: 363
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)