Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0818
         (501 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.31 
SB_23485| Best HMM Match : PsbJ (HMM E-Value=2.4)                      29   2.2  

>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +1

Query: 67   VGSTEVFGHINQCTIRIDCSSIINRKEGIIDQLLFPNGRG*SYHRRWR 210
            +G  E+   IN C    DC S +   EG I+   +P G   S    WR
Sbjct: 888  LGDAEIQNLINMCNYSQDCGSTLRASEGTINSPNWPQGYKGSKTCTWR 935


>SB_23485| Best HMM Match : PsbJ (HMM E-Value=2.4)
          Length = 497

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 364 PPITPRSFYKRRHNFTFGIRASP-FLFDVSVNASRFLFFND 245
           PPITP +F++   +   GI  S  F F +   ASR L  +D
Sbjct: 48  PPITPNAFWEWSVSLLTGILVSSLFYFTLETRASRLLASSD 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,316,341
Number of Sequences: 59808
Number of extensions: 226175
Number of successful extensions: 400
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)