Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0818
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117202-7|CAB55070.1|  302|Caenorhabditis elegans Hypothetical ...    29   1.4  
AF022967-9|AAB69881.2|  205|Caenorhabditis elegans Hypothetical ...    28   4.4  
U64859-1|AAC69092.2|  468|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnorm...    27   7.6  
U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnorm...    27   7.6  
AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor ...    27   7.6  

>AL117202-7|CAB55070.1|  302|Caenorhabditis elegans Hypothetical
           protein Y47D3A.10 protein.
          Length = 302

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 216 RNHQWSGRHPSLKNRNRLALTETSKRK 296
           +N QW+   PS KN    A+TET  RK
Sbjct: 63  QNQQWTPFAPSTKNSKLSAITETEHRK 89


>AF022967-9|AAB69881.2|  205|Caenorhabditis elegans Hypothetical
           protein C13A2.11 protein.
          Length = 205

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 191 LIIEDGEPTQSPVVGAPSIVEKQKPASVDG 280
           LI +    T SP++  PSI+  Q+P   DG
Sbjct: 43  LIKQTNRLTSSPLIKIPSIIHVQRPIGKDG 72


>U64859-1|AAC69092.2|  468|Caenorhabditis elegans Hypothetical
           protein R09F10.3 protein.
          Length = 468

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +2

Query: 233 GAPSIVEKQKPASVDG 280
           GAPS V  Q PASVDG
Sbjct: 43  GAPSSVASQPPASVDG 58


>U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnormal
           morphology protein1, isoform a protein.
          Length = 1117

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 270 LAGFCFSTMDGAPTTGDCV-GSPSSMIRLSASIRKQ*LINNTF 145
           L G C ST  G  T+G+CV  S  S I  S   R +    NT+
Sbjct: 254 LIGLCMSTGSGIKTSGECVCDSGYSQIADSNGARCESCPTNTY 296


>U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnormal
           morphology protein1, isoform b protein.
          Length = 1122

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 270 LAGFCFSTMDGAPTTGDCV-GSPSSMIRLSASIRKQ*LINNTF 145
           L G C ST  G  T+G+CV  S  S I  S   R +    NT+
Sbjct: 254 LIGLCMSTGSGIKTSGECVCDSGYSQIADSNGARCESCPTNTY 296


>AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor
           tyrosine kinase protein.
          Length = 1122

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 270 LAGFCFSTMDGAPTTGDCV-GSPSSMIRLSASIRKQ*LINNTF 145
           L G C ST  G  T+G+CV  S  S I  S   R +    NT+
Sbjct: 254 LIGLCMSTGSGIKTSGECVCDSGYSQIADSNGARCESCPTNTY 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,335,820
Number of Sequences: 27780
Number of extensions: 191386
Number of successful extensions: 433
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)