Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0817
         (428 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   1.9  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   4.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 347  LRVAPEEHPVLLTEAPLNPKANREKM 424
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 355 DTQLIVEGVVPDLLHVI 305
           + Q +V+ V PD+LH+I
Sbjct: 21  NNQTVVDKVPPDMLHLI 37


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 110 GMCKAGFAGD 139
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +3

Query: 30  QRPQHKHTQSSRCATTMLLRL*STMAPACARPVSPAT 140
           +RPQ+K   +   +  +L+R        C  P  P+T
Sbjct: 360 RRPQYKFETNRYSSGRVLMRTVRGKEKTCYYPYHPST 396


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +3

Query: 30  QRPQHKHTQSSRCATTMLLRL*STMAPACARPVSPAT 140
           +RPQ+K   +   +  +L+R        C  P  P+T
Sbjct: 360 RRPQYKFETNRYSSGRVLMRTVRGKEKTCYYPYHPST 396


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,268
Number of Sequences: 438
Number of extensions: 2356
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)