Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0814
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subu...    86   4e-18
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   2.7  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    26   3.6  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    26   3.6  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    26   4.7  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   6.2  

>SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subunit
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 137

 Score = 85.8 bits (203), Expect = 4e-18
 Identities = 45/88 (51%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
 Frame = -1

Query: 373 NLSGFNKYGLLRDDC-LHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEW 197
           +LSG+ KYGL  DD  L E  D  +AL RLP     +R +RI RA+QLS++  ILPK EW
Sbjct: 29  HLSGYRKYGLRYDDLMLEENDDTQKALSRLPKMESYDRVYRIRRAMQLSIENKILPKSEW 88

Query: 196 TKYEEDSLYLTPIVEQVEKERLEREQWE 113
           TK EED  YL P++ +V  ER ERE ++
Sbjct: 89  TKPEEDYHYLRPVLAEVIAERKEREAFD 116


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 428 HHGSCSKSHFIDSQIYDFNVILT 496
           HHGS SK H I  Q+  ++++LT
Sbjct: 474 HHGS-SKKHKIAEQLMSYDIVLT 495


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/47 (21%), Positives = 25/47 (53%)
 Frame = -1

Query: 256 RIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQW 116
           R+ + +  S ++  +  ++ + YE D   LT  + ++E E + ++ W
Sbjct: 278 RVKKDLFASDEEDDVSADQLSSYERDKARLTQQIRELEAENVAKKSW 324


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 368 KIVGPFAEAVTSVNSRGSESHHGSCSKSH-FIDSQIYDFNVILTQTTRSKT 517
           K + P ++ +T  N + + SH GS +KSH F    ++D N  ++    + T
Sbjct: 320 KELSPHSQ-ITLSNVKNNHSHVGSQTKSHSFATPSVFDNNKPVSSDNHNNT 369


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +1

Query: 268 RQQHGMEVCGVLQLHQEFHASNHPV 342
           + +HG  VC    L+   H  N P+
Sbjct: 432 KDRHGQTVCNACGLYARLHGHNRPI 456


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 385 KWAYNLSGFNKYGLLRDD 332
           KW + +  F++YGLL D+
Sbjct: 926 KWIFKVQHFSRYGLLDDE 943


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,358
Number of Sequences: 5004
Number of extensions: 44335
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)