Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0814
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   5.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   6.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.0  

>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 514 NQFACDGNTHSVNQNRGH 567
           N  AC  N HS+ +  GH
Sbjct: 31  NDSACAANCHSLGKAGGH 48


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 484 RNSYSNNQKQNQFACDGNTH 543
           R+S S+N  +NQ+    N H
Sbjct: 103 RSSTSSNDPKNQYKNQNNNH 122


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 267 SSTTWDGSLRSASVTSGVSCKQSS 338
           +ST   GSL ++   SGVS  +SS
Sbjct: 233 TSTPGSGSLPASPADSGVSDVESS 256


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 163  PIVEQVEKERLEREQWEKEY*MRHGIVV 80
            P  +Q ++++ + +Q +KEY    G+VV
Sbjct: 1531 PQQQQQQQQQQQPQQQQKEYGAVSGLVV 1558


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,366
Number of Sequences: 438
Number of extensions: 3033
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)