Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0813
(341 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc... 27 0.80
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 27 1.1
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 1.8
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c... 25 2.4
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|... 25 2.4
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 25 3.2
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 24 5.6
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 24 7.5
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 24 7.5
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 24 7.5
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 23 9.8
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo... 23 9.8
>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 27.1 bits (57), Expect = 0.80
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +2
Query: 242 WERETWYPQVQRWPSPHLRPYK 307
WE + + P RW H +P+K
Sbjct: 156 WENDVYGPNEDRWDENHAQPHK 177
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 26.6 bits (56), Expect = 1.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 77 NGCCEYFPKCFRW 115
NG CE++ K FRW
Sbjct: 326 NGACEHYKKSFRW 338
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 1.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 248 RETWYPQVQRWPSPHLRPYKK 310
+ETWY ++QRW L Y+K
Sbjct: 1296 KETWYEKLQRWEDA-LSAYEK 1315
>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 679
Score = 25.4 bits (53), Expect = 2.4
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = +1
Query: 55 KHFVSLKKWLLRIFSEVLSVVYYGDQQRIERP*HVVFRP 171
KH V + W SEVL + Y D H F P
Sbjct: 164 KHIVDARMWTEAYMSEVLRSLLYSDDTNSRFAGHRRFNP 202
>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 25.4 bits (53), Expect = 2.4
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 40 C*KKIKHFVSLKKW--LLRIFSEVLSVVYYGDQQRI 141
C K IKHF LKKW + FSEV +G RI
Sbjct: 152 CGKGIKHF--LKKWENMPMAFSEVFLFNIFGGALRI 185
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 25.0 bits (52), Expect = 3.2
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 3 LATQAFGFDERELLKENKAFRELEEMAAANIFRSAFGGL 119
+A +A L++ N REL + AANI S F GL
Sbjct: 349 IAVKAISLQTNNLIRSN---RELISLGAANIGSSLFCGL 384
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 24.2 bits (50), Expect = 5.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 39 LLKENKAFRELEEMAAANIFRSAFGGLLRRSTTYR 143
LLKE KA+R++ ++A + R+ G L R R
Sbjct: 170 LLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQR 204
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 23.8 bits (49), Expect = 7.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 39 LLKENKAFRELEEMAAANIFRSAFGGLLRRSTTYR 143
LLKE KA+R++ ++A + R+ G L R R
Sbjct: 170 LLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQR 204
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 23.8 bits (49), Expect = 7.5
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +3
Query: 78 MAAANIFRSAFGGLLRRSTTYRTSVTCRLSTVSLQQK 188
+++ +I R++ ++R ++ S + RL + LQQK
Sbjct: 445 LSSVDIPRASIAHVVRATSAMSQSASARLKNLGLQQK 481
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 23.8 bits (49), Expect = 7.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 3 LATQAFGFDERELLKENKAFRELEEMAAANIFRSAFGGLLRR 128
L A+G E E K+ K E + A ++F S G ++RR
Sbjct: 182 LKEDAYGSIEEEESKKRKFEEEEIDREAKSLFSSQDGEIIRR 223
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 23.4 bits (48), Expect = 9.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 201 KAAVKIYKSQALQNGNEKHGIRKYSGGPPL 290
KA K K A++ G + Y GGPP+
Sbjct: 540 KAISKRGKDFAMRRDERFRGRKPYRGGPPI 569
>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 413
Score = 23.4 bits (48), Expect = 9.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 152 NMSSFDRFVAAKVQHN*SRCQNIQKSGPSEWERETW 259
N FD + K H S+ QN +K+ + +E W
Sbjct: 122 NNKKFDTSIVLKHTHLSSKSQNEKKARVKVFRQEIW 157
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,381,386
Number of Sequences: 5004
Number of extensions: 24197
Number of successful extensions: 75
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -