Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0813
         (341 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0453 - 3471656-3471819,3472416-3472580,3473062-3473145,347...    28   2.2  
05_03_0247 + 10925329-10925566,10925744-10926357,10926723-109272...    27   3.9  
08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671     26   6.7  
02_03_0264 + 17059279-17059638,17060226-17060260,17060307-170603...    26   8.9  
02_03_0077 + 14874273-14874571,14875304-14876150,14876878-148771...    26   8.9  

>03_01_0453 -
           3471656-3471819,3472416-3472580,3473062-3473145,
           3473304-3473375,3473496-3473574,3473894-3473990,
           3474064-3474116,3474257-3474386,3474464-3474498,
           3476108-3476212,3476759-3476833,3477671-3477799,
           3477918-3478097,3478737-3478820,3478943-3479059,
           3479170-3479242,3479316-3479437,3479519-3479641,
           3479917-3479989,3480218-3480396,3480699-3480837,
           3481105-3481259,3481570-3481875
          Length = 912

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 175 RCSKSSAQLKPLSKYTKVRPFRMGTRNMVSASTAVALPSP 294
           + SK  A++K + K+  + PF     N +    +VALP P
Sbjct: 155 KISKLEAEVKQIYKFPLILPFFQHQENKMLLFLSVALPQP 194


>05_03_0247 +
           10925329-10925566,10925744-10926357,10926723-10927238,
           10927376-10927504
          Length = 498

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 152 NMSSFDRFVAAKVQHN*SRCQNIQKSGPSEWE 247
           N++  DR+ AAK  +   RCQ     GPS W+
Sbjct: 116 NITDVDRYAAAKELYLGDRCQ--VADGPSPWQ 145


>08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671
          Length = 502

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -3

Query: 300 GLR*GEGHRCTCGYHVSRSHSEGPDFC 220
           G R   G RC C    SR   EGPD C
Sbjct: 357 GGRGESGGRCKCSL-CSRQEEEGPDHC 382


>02_03_0264 +
           17059279-17059638,17060226-17060260,17060307-17060385,
           17060580-17061123,17061328-17061404
          Length = 364

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 285 EGHRCTCGYHVSRSHSEGP 229
           +G +  C YH+++SHS  P
Sbjct: 262 DGPKALCEYHLAKSHSNTP 280


>02_03_0077 +
           14874273-14874571,14875304-14876150,14876878-14877147,
           14877313-14878065
          Length = 722

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 236 SEWERETWYPQVQRWPSPHLRPY 304
           S+WERE +Y  +  W   H R Y
Sbjct: 423 SDWEREAYY-MLSGWEYAHTREY 444


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,146,604
Number of Sequences: 37544
Number of extensions: 158665
Number of successful extensions: 417
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)