Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0813
(341 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46601| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.24
SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09) 29 0.75
SB_21713| Best HMM Match : ShTK (HMM E-Value=3.9e-05) 29 0.75
SB_23245| Best HMM Match : ApoC-I (HMM E-Value=5.7) 29 1.3
SB_24194| Best HMM Match : RyR (HMM E-Value=5) 29 1.3
SB_17604| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 27 3.0
SB_43114| Best HMM Match : Sas10_Utp3 (HMM E-Value=1.2) 26 7.0
SB_32491| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.0
SB_4782| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
>SB_46601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 880
Score = 31.1 bits (67), Expect = 0.24
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = -1
Query: 95 NIRSSHFFKLTKCFIFFQQFSLIESESL 12
N +S + +++ FIFF+Q+SLI+SE++
Sbjct: 642 NDKSLKAYPISRFFIFFEQYSLIQSETI 669
>SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09)
Length = 645
Score = 29.5 bits (63), Expect = 0.75
Identities = 9/23 (39%), Positives = 20/23 (86%)
Frame = -1
Query: 80 HFFKLTKCFIFFQQFSLIESESL 12
H + +++ FIFF+Q+++I+SE++
Sbjct: 513 HSYPVSRFFIFFEQYAIIQSETI 535
>SB_21713| Best HMM Match : ShTK (HMM E-Value=3.9e-05)
Length = 378
Score = 29.5 bits (63), Expect = 0.75
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 74 RNGCCEYFPKCFRWSITEINNV*NVRNMSSFDRFVAAK 187
R+GC + FPKC W + +N+ + ++ F RF AK
Sbjct: 43 RHGCVDVFPKCAEWK--KNSNMCSNPKLAPFLRFGCAK 78
>SB_23245| Best HMM Match : ApoC-I (HMM E-Value=5.7)
Length = 206
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = +2
Query: 197 N*SRCQNIQKSGPSEWERETWY 262
N SR NIQ SG E E ETWY
Sbjct: 107 NQSRRNNIQVSGIEESEGETWY 128
>SB_24194| Best HMM Match : RyR (HMM E-Value=5)
Length = 211
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = +2
Query: 197 N*SRCQNIQKSGPSEWERETWY 262
N SR NIQ SG E E ETWY
Sbjct: 107 NQSRRNNIQVSGIEESEGETWY 128
>SB_17604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 36 ELLKENKAFRELEEMAAANIFRSAFGGLLRRSTT 137
E LK NKA ++L NI+R LL+R T+
Sbjct: 51 EALKLNKAVKQLLREGIPNIYRGVIPPLLQRGTS 84
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 27.9 bits (59), Expect = 2.3
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 121 YGDQQRIERP*HVV-FRPFRCSKSSAQLKPLSKYTKVRPFRMG-TRNMVSASTAVALPSP 294
YG QQ I P ++ ++P + S S+ +KP T P + + N + S + +P
Sbjct: 1237 YGRQQHIGSPSSLISYKPIKPSPSTTPIKPSPSTTSTTPIKPSPSTNPIKPSPSTTSTTP 1296
Score = 25.8 bits (54), Expect = 9.2
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 169 PFRCSKSSAQLKPLSKYTKVRPFRMGTRNMVSASTAVALPSP*T 300
P + S S+ +KP T ++P T S ST PSP T
Sbjct: 1296 PIKPSPSTTPIKPSPSTTPIKPSPSTTPIKPSPSTTPIKPSPST 1339
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 27.5 bits (58), Expect = 3.0
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 24 FDERELLKENKAFRELEEMAAAN-IFRSAFGGLLRRSTTYRTSVTCRL 164
FD EL + N +ELEE+ + + S+ L R+++ T + C L
Sbjct: 342 FDSEELERSNYRIKELEELVHQHEVENSSLRNNLTRTSSQVTKLKCEL 389
>SB_43114| Best HMM Match : Sas10_Utp3 (HMM E-Value=1.2)
Length = 361
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 132 TTYRTSVTCRLSTVSLQQKFSTIKAAVK 215
T YRT + CR +L+ +F IK K
Sbjct: 173 TQYRTGIQCRKRVKTLEDEFKKIKITGK 200
>SB_32491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 199
Score = 26.2 bits (55), Expect = 7.0
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +3
Query: 99 RSAFGGLLRRSTTYRTSVTCRLSTVSLQQKFSTIKAAVKIYKSQALQNG 245
R+ F + T R+ +TC + Q+F+T + +I + Q L G
Sbjct: 4 RTPFAMRKLKFATQRSHITCPSVITAFAQRFATFAISTRIAEIQMLATG 52
>SB_4782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1286
Score = 25.8 bits (54), Expect = 9.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 135 TYRTSVTCRLSTVSLQQKFSTIKAAVKIYKSQALQNGNEKHGI 263
T RTS + LQQ KA V++Y S L++ +E+ +
Sbjct: 5 TGRTSPRMDWNATDLQQALKKFKATVELYFSGPLKSKSEEEKV 47
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,487,085
Number of Sequences: 59808
Number of extensions: 186826
Number of successful extensions: 557
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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